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LOC115101832 lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase A-like [ Oncorhynchus nerka (sockeye salmon) ]

Gene ID: 115101832, updated on 9-May-2024

Summary

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Gene symbol
LOC115101832
Gene description
lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase A-like
See related
EnsemblRapid:ENSONEG00000003245
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus nerka
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC115101832 in Genome Data Viewer
Location:
chromosome: LG20
Exon count:
2
Annotation release Status Assembly LG Location
RS_2024_05 current Oner_Uvic_2.0 (GCF_034236695.1) LG20 NC_088415.1 (84324109..84345361, complement)
100 previous assembly Oner_1.0 (GCF_006149115.1) LG20 NC_042554.1 (65861704..65878112, complement)

Linkage Group LG20 - NC_088415.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115103314 Neighboring gene small nucleolar RNA SNORA81 Neighboring gene small nucleolar RNA SNORA81 Neighboring gene F-box-like/WD repeat-containing protein TBL1XR1 Neighboring gene calcium-activated potassium channel subunit beta-2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase A-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034236695.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oner_Uvic_2.0 Primary Assembly

Genomic

  1. NC_088415.1 Reference Oner_Uvic_2.0 Primary Assembly

    Range
    84324109..84345361 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029621307.2 → XP_029477167.1  lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase A-like

    Related
    ENSONEP00000006554.1
    Conserved Domains (1) summary
    cl21608
    Location:100 → 300
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases