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LOC115101163 VIP36-like protein [ Oncorhynchus nerka (sockeye salmon) ]

Gene ID: 115101163, updated on 19-Jun-2024

Summary

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Gene symbol
LOC115101163
Gene description
VIP36-like protein
See related
EnsemblRapid:ENSONEG00000020379
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus nerka
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC115101163 in Genome Data Viewer
Location:
chromosome: LG19
Exon count:
9
Annotation release Status Assembly LG Location
RS_2024_05 current Oner_Uvic_2.0 (GCF_034236695.1) LG19 NC_088414.1 (19271648..19276392, complement)
100 previous assembly Oner_1.0 (GCF_006149115.1) LG19 NC_042553.1 (16933311..16938068, complement)

Linkage Group LG19 - NC_088414.1Genomic Context describing neighboring genes Neighboring gene ADP-ribosylation factor-like protein 3 Neighboring gene WW domain-binding protein 1-like Neighboring gene uncharacterized LOC135562394 Neighboring gene mitochondrial fission process protein 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-mannose binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
VIP36-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034236695.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oner_Uvic_2.0 Primary Assembly

Genomic

  1. NC_088414.1 Reference Oner_Uvic_2.0 Primary Assembly

    Range
    19271648..19276392 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029620435.2 → XP_029476295.1  VIP36-like protein isoform X2

  2. XM_029620434.2 → XP_029476294.1  VIP36-like protein isoform X1

    Related
    ENSONEP00000044476.1
    Conserved Domains (1) summary
    cl14058
    Location:54 → 313
    lectin_L-type; legume lectins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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