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CNTNAP5 contactin associated protein family member 5 [ Rhinatrema bivittatum (two-lined caecilian) ]

Gene ID: 115093457, updated on 17-Mar-2024

Summary

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Gene symbol
CNTNAP5
Gene description
contactin associated protein family member 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinatrema bivittatum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Rhinatrematidae; Rhinatrema
Orthologs
human mouse all
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Genomic context

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See CNTNAP5 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
23
Annotation release Status Assembly Chr Location
100 current aRhiBiv1.1 (GCF_901001135.1) 6 NC_042620.1 (22612325..23302568, complement)

Chromosome 6 - NC_042620.1Genomic Context describing neighboring genes Neighboring gene bridging integrator 1 Neighboring gene uncharacterized LOC115093437 Neighboring gene uncharacterized LOC115093180 Neighboring gene uncharacterized LOC115093181

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042620.1 Chromosome 6 Reference aRhiBiv1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptomes of caecilian amphibians highlight incomplete knowledge of vertebrate gene families. Torres-Sánchez M, et al. DNA Res, 2019 Feb 1. PMID 30351380, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
contactin-associated protein-like 5
Names
contactin associated protein like 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rhinatrema bivittatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aRhiBiv1.1 Primary Assembly

Genomic

  1. NC_042620.1 Reference aRhiBiv1.1 Primary Assembly

    Range
    22612325..23302568 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029605214.1 → XP_029461074.1  contactin-associated protein-like 5

    Conserved Domains (6) summary
    smart00282
    Location:377 → 508
    LamG; Laminin G domain
    cd00054
    Location:947 → 981
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00057
    Location:29 → 159
    FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
    cd00110
    Location:779 → 923
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00008
    Location:537 → 568
    EGF; EGF-like domain
    pfam02210
    Location:195 → 321
    Laminin_G_2; Laminin G domain
Nucleotide Protein
Heading Accession and Version

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