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TTLL4 tubulin tyrosine ligase like 4 [ Rhinatrema bivittatum (two-lined caecilian) ]

Gene ID: 115093374, updated on 17-Mar-2024

Summary

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Gene symbol
TTLL4
Gene description
tubulin tyrosine ligase like 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinatrema bivittatum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Rhinatrematidae; Rhinatrema
Orthologs
human mouse all
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Genomic context

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See TTLL4 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
21
Annotation release Status Assembly Chr Location
100 current aRhiBiv1.1 (GCF_901001135.1) 6 NC_042620.1 (8815721..9189348)

Chromosome 6 - NC_042620.1Genomic Context describing neighboring genes Neighboring gene ATP binding cassette subfamily B member 6 (LAN blood group) Neighboring gene cyclin Pas1/PHO80 domain containing 1 Neighboring gene uncharacterized LOC115093375 Neighboring gene solute carrier family 23 member 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042620.1 Chromosome 6 Reference aRhiBiv1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptomes of caecilian amphibians highlight incomplete knowledge of vertebrate gene families. Torres-Sánchez M, et al. DNA Res, 2019 Feb 1. PMID 30351380, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tubulin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tubulin-glutamic acid ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in microtubule cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyglutamylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tubulin polyglutamylase TTLL4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rhinatrema bivittatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aRhiBiv1.1 Primary Assembly

Genomic

  1. NC_042620.1 Reference aRhiBiv1.1 Primary Assembly

    Range
    8815721..9189348
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029605017.1 → XP_029460877.1  tubulin polyglutamylase TTLL4 isoform X1

  2. XM_029605022.1 → XP_029460882.1  tubulin polyglutamylase TTLL4 isoform X3

    Conserved Domains (1) summary
    pfam03133
    Location:642 → 889
    TTL; Tubulin-tyrosine ligase family

  3. XM_029605021.1 → XP_029460881.1  tubulin polyglutamylase TTLL4 isoform X2

  4. XM_029605019.1 → XP_029460879.1  tubulin polyglutamylase TTLL4 isoform X1

    Conserved Domains (1) summary
    pfam03133
    Location:642 → 934
    TTL; Tubulin-tyrosine ligase family

  5. XM_029605020.1 → XP_029460880.1  tubulin polyglutamylase TTLL4 isoform X1

  6. XM_029605018.1 → XP_029460878.1  tubulin polyglutamylase TTLL4 isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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