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KCTD9 potassium channel tetramerization domain containing 9 [ Rhinatrema bivittatum (two-lined caecilian) ]

Gene ID: 115092785, updated on 17-Mar-2024

Summary

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Gene symbol
KCTD9
Gene description
potassium channel tetramerization domain containing 9
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinatrema bivittatum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Rhinatrematidae; Rhinatrema
Orthologs
human mouse all
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Genomic context

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See KCTD9 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
13
Annotation release Status Assembly Chr Location
100 current aRhiBiv1.1 (GCF_901001135.1) 5 NC_042619.1 (289452495..289531324)

Chromosome 5 - NC_042619.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115091634 Neighboring gene cell division cycle associated 2 Neighboring gene gonadotropin releasing hormone 1 Neighboring gene dedicator of cytokinesis 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042619.1 Chromosome 5 Reference aRhiBiv1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptomes of caecilian amphibians highlight incomplete knowledge of vertebrate gene families. Torres-Sánchez M, et al. DNA Res, 2019 Feb 1. PMID 30351380, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein homooligomerization IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
BTB/POZ domain-containing protein KCTD9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rhinatrema bivittatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aRhiBiv1.1 Primary Assembly

Genomic

  1. NC_042619.1 Reference aRhiBiv1.1 Primary Assembly

    Range
    289452495..289531324
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029604100.1 → XP_029459960.1  BTB/POZ domain-containing protein KCTD9 isoform X1

    Conserved Domains (3) summary
    COG1357
    Location:256 → 437
    YjbI; Uncharacterized protein YjbI, contains pentapeptide repeats [Function unknown]
    cd17073
    Location:40 → 104
    KHA; dimerization domain of potassium ion channel, similar to doublecortin-like domain, found in potassium channel tetramerization domain containing 9 (KCTD9) and similar proteins
    cd18368
    Location:127 → 247
    BTB_POZ_KCTD9; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in potassium channel tetramerization domain-containing protein 9 (KCTD9)

  2. XM_029604103.1 → XP_029459963.1  BTB/POZ domain-containing protein KCTD9 isoform X3

    Conserved Domains (3) summary
    COG1357
    Location:213 → 394
    YjbI; Uncharacterized protein YjbI, contains pentapeptide repeats [Function unknown]
    cd17073
    Location:40 → 104
    KHA; dimerization domain of potassium ion channel, similar to doublecortin-like domain, found in potassium channel tetramerization domain containing 9 (KCTD9) and similar proteins
    cl38908
    Location:127 → 204
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily

  3. XM_029604104.1 → XP_029459964.1  BTB/POZ domain-containing protein KCTD9 isoform X4

  4. XM_029604102.1 → XP_029459962.1  BTB/POZ domain-containing protein KCTD9 isoform X2

Nucleotide Protein
Heading Accession and Version

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