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PRUNE1 prune exopolyphosphatase 1 [ Rhinatrema bivittatum (two-lined caecilian) ]

Gene ID: 115078916, updated on 17-Mar-2024

Summary

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Gene symbol
PRUNE1
Gene description
prune exopolyphosphatase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinatrema bivittatum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Rhinatrematidae; Rhinatrema
Orthologs
human mouse all
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Genomic context

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See PRUNE1 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
13
Annotation release Status Assembly Chr Location
100 current aRhiBiv1.1 (GCF_901001135.1) 16 NC_042630.1 (29500664..29522684, complement)

Chromosome 16 - NC_042630.1Genomic Context describing neighboring genes Neighboring gene CDC42 small effector 1 Neighboring gene BCL2 interacting protein like Neighboring gene proline-rich protein 36-like Neighboring gene uncharacterized LOC115078013 Neighboring gene MINDY lysine 48 deubiquitinase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042630.1 Chromosome 16 Reference aRhiBiv1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptomes of caecilian amphibians highlight incomplete knowledge of vertebrate gene families. Torres-Sánchez M, et al. DNA Res, 2019 Feb 1. PMID 30351380, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables exopolyphosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exopolyphosphatase PRUNE1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rhinatrema bivittatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aRhiBiv1.1 Primary Assembly

Genomic

  1. NC_042630.1 Reference aRhiBiv1.1 Primary Assembly

    Range
    29500664..29522684 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029582003.1 → XP_029437863.1  exopolyphosphatase PRUNE1 isoform X3

    Conserved Domains (1) summary
    COG1227
    Location:14 → 350
    PPX1; Inorganic pyrophosphatase/exopolyphosphatase [Energy production and conversion, Inorganic ion transport and metabolism]

  2. XM_029582002.1 → XP_029437862.1  exopolyphosphatase PRUNE1 isoform X2

  3. XM_029582007.1 → XP_029437867.1  exopolyphosphatase PRUNE1 isoform X4

  4. XM_029582001.1 → XP_029437861.1  exopolyphosphatase PRUNE1 isoform X1

  5. XM_029582006.1 → XP_029437866.1  exopolyphosphatase PRUNE1 isoform X4

  6. XM_029582004.1 → XP_029437864.1  exopolyphosphatase PRUNE1 isoform X4

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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