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arntl aryl hydrocarbon receptor nuclear translocator like [ Echeneis naucrates (live sharksucker) ]

Gene ID: 115056281, updated on 21-Dec-2023

Summary

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Gene symbol
arntl
Gene description
aryl hydrocarbon receptor nuclear translocator like
See related
Ensembl:ENSENLG00000002124
Gene type
protein coding
RefSeq status
MODEL
Organism
Echeneis naucrates
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Echeneidae; Echeneis
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Genomic context

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See arntl in Genome Data Viewer
Location:
chromosome: 16
Exon count:
20
Annotation release Status Assembly Chr Location
100 current fEcheNa1.1 (GCF_900963305.1) 16 NC_042526.1 (2902947..2923801, complement)

Chromosome 16 - NC_042526.1Genomic Context describing neighboring genes Neighboring gene BTB/POZ domain-containing protein 10-like Neighboring gene parathyroid hormone Neighboring gene PPFIA binding protein 2b Neighboring gene RAB15 effector protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042526.1 Chromosome 16 Reference fEcheNa1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in circadian rhythm IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of aryl hydrocarbon receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aryl hydrocarbon receptor nuclear translocator-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Echeneis naucrates Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEcheNa1.1 Primary Assembly

Genomic

  1. NC_042526.1 Reference fEcheNa1.1 Primary Assembly

    Range
    2902947..2923801 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029522593.1 → XP_029378453.1  aryl hydrocarbon receptor nuclear translocator-like protein 1

    UniProtKB/TrEMBL
    A0A665T4F7, A0A665TNT1
    Related
    ENSENLP00000004489.1, ENSENLT00000004735.1
    Conserved Domains (3) summary
    pfam00989
    Location:165 → 272
    PAS; PAS fold
    pfam14598
    Location:358 → 461
    PAS_11; PAS domain
    cd11438
    Location:86 → 149
    bHLH-PAS_ARNTL_PASD3; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 1 (ARNTL) and similar proteins
Nucleotide Protein
Heading Accession and Version

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