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capn3b calpain 3b [ Cottoperca gobio ]

Gene ID: 115028992, updated on 17-Mar-2024

Summary

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Gene symbol
capn3b
Gene description
calpain 3b
See related
Ensembl:ENSCGOG00000023894
Gene type
protein coding
RefSeq status
MODEL
Organism
Cottoperca gobio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Bovichtidae; Cottoperca
Orthologs
zebrafish all
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Genomic context

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See capn3b in Genome Data Viewer
Location:
chromosome: 24
Exon count:
24
Annotation release Status Assembly Chr Location
100 current fCotGob3.1 (GCF_900634415.1) 24 NC_041378.1 (6099684..6113874)

Chromosome 24 - NC_041378.1Genomic Context describing neighboring genes Neighboring gene macoilin-like Neighboring gene nuclear receptor binding protein 1 Neighboring gene zinc finger protein 106-like Neighboring gene zinc finger protein 106b Neighboring gene churchill domain containing 1 Neighboring gene tau tubulin kinase 2b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041378.1 Chromosome 24 Reference fCotGob3.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cottoperca gobio Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fCotGob3.1

Genomic

  1. NC_041378.1 Reference fCotGob3.1

    Range
    6099684..6113874
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029462980.1 → XP_029318840.1  calpain-3-like isoform X3

    UniProtKB/TrEMBL
    A0A6J2SAQ8
    Related
    ENSCGOP00000054989.1, ENSCGOT00000058567.1

  2. XM_029462977.1 → XP_029318837.1  calpain-3-like isoform X1

    UniProtKB/TrEMBL
    A0A6J2SAL8
    Related
    ENSCGOP00000054982.1, ENSCGOT00000058560.1
    Conserved Domains (5) summary
    cd15897
    Location:601 → 629
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:601 → 769
    EFh_PEF; The penta-EF hand (PEF) family
    pfam00648
    Location:76 → 370
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:391 → 534
    Calpain_III; Calpain large subunit, domain III
    pfam16648
    Location:538 → 580
    Calpain_u2; Unstructured region on Calpain-3

  3. XM_029462979.1 → XP_029318839.1  calpain-3-like isoform X2

    UniProtKB/TrEMBL
    A0A6J2SA34
    Related
    ENSCGOP00000054984.1, ENSCGOT00000058562.1
Nucleotide Protein
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