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LOC115021154 exostosin-1a-like [ Cottoperca gobio ]

Gene ID: 115021154, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115021154
Gene description
exostosin-1a-like
See related
Ensembl:ENSCGOG00000001921
Gene type
protein coding
RefSeq status
MODEL
Organism
Cottoperca gobio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Bovichtidae; Cottoperca
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Genomic context

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See LOC115021154 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
12
Annotation release Status Assembly Chr Location
100 current fCotGob3.1 (GCF_900634415.1) 16 NC_041370.1 (17584626..17621197, complement)

Chromosome 16 - NC_041370.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 3 subunit H Neighboring gene double-strand-break repair protein rad21 homolog A-like Neighboring gene WASH complex subunit 5 Neighboring gene NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041370.1 Chromosome 16 Reference fCotGob3.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exostosin-1a-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cottoperca gobio Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fCotGob3.1

Genomic

  1. NC_041370.1 Reference fCotGob3.1

    Range
    17584626..17621197 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029451337.1 → XP_029307197.1  exostosin-1a-like

    UniProtKB/TrEMBL
    A0A6J2RCN3
    Related
    ENSCGOP00000003984.1, ENSCGOT00000004322.1

  2. XM_029451336.1 → XP_029307196.1  exostosin-1a-like

    UniProtKB/TrEMBL
    A0A6J2RCN3
    Related
    ENSCGOP00000003989.1, ENSCGOT00000004327.1
    Conserved Domains (2) summary
    pfam03016
    Location:108 → 393
    Exostosin; Exostosin family
    pfam09258
    Location:477 → 722
    Glyco_transf_64; Glycosyl transferase family 64 domain
Nucleotide Protein
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