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plecb plectin b [ Cottoperca gobio ]

Gene ID: 115020878, updated on 17-Mar-2024

Summary

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Gene symbol
plecb
Gene description
plectin b
See related
Ensembl:ENSCGOG00000010803
Gene type
protein coding
RefSeq status
MODEL
Organism
Cottoperca gobio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Bovichtidae; Cottoperca
Orthologs
zebrafish all
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Genomic context

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See plecb in Genome Data Viewer
Location:
chromosome: 16
Exon count:
37
Annotation release Status Assembly Chr Location
100 current fCotGob3.1 (GCF_900634415.1) 16 NC_041370.1 (19856360..19925475, complement)

Chromosome 16 - NC_041370.1Genomic Context describing neighboring genes Neighboring gene riboflavin transporter 2-like Neighboring gene microtubule actin crosslinking factor 1b Neighboring gene hepcidin-like Neighboring gene hepcidin-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041370.1 Chromosome 16 Reference fCotGob3.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ankyrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hemidesmosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in hemidesmosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plectin-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cottoperca gobio Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fCotGob3.1

Genomic

  1. NC_041370.1 Reference fCotGob3.1

    Range
    19856360..19925475 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029450909.1 → XP_029306769.1  plectin-like isoform X3

    UniProtKB/TrEMBL
    A0A6J2R906

  2. XM_029450908.1 → XP_029306768.1  plectin-like isoform X2

    UniProtKB/TrEMBL
    A0A6J2R7M7

  3. XM_029450907.1 → XP_029306767.1  plectin-like isoform X1

    UniProtKB/TrEMBL
    A0A6J2RBG2

  4. XM_029450910.1 → XP_029306770.1  plectin-like isoform X4

    UniProtKB/TrEMBL
    A0A6J2RBV4
    Related
    ENSCGOP00000024051.1, ENSCGOT00000025945.1
    Conserved Domains (8) summary
    PTZ00121
    Location:1214 → 2043
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:3398 → 3434
    PLEC; Plectin repeat
    COG5069
    Location:10 → 232
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:591 → 780
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl02488
    Location:1098 → 1258
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:4007 → 4046
    Plectin; Plectin repeat
    pfam17902
    Location:766 → 832
    SH3_10; SH3 domain
    pfam18373
    Location:867 → 944
    Spectrin_like; Spectrin like domain
Nucleotide Protein
Heading Accession and Version

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