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smfn small fragment nuclease [ Cottoperca gobio ]

Gene ID: 115018961, updated on 17-Mar-2024

Summary

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Gene symbol
smfn
Gene description
small fragment nuclease
See related
Ensembl:ENSCGOG00000005298
Gene type
protein coding
RefSeq status
MODEL
Organism
Cottoperca gobio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Bovichtidae; Cottoperca
Also known as
rexo2
Orthologs
human zebrafish all
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Genomic context

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See smfn in Genome Data Viewer
Location:
chromosome: 14
Exon count:
7
Annotation release Status Assembly Chr Location
100 current fCotGob3.1 (GCF_900634415.1) 14 NC_041368.1 (4043042..4046208)

Chromosome 14 - NC_041368.1Genomic Context describing neighboring genes Neighboring gene piggyBac transposable element-derived protein 4-like Neighboring gene kirre like nephrin family adhesion molecule 3a Neighboring gene CXADR-like membrane protein Neighboring gene uncharacterized LOC115019369

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041368.1 Chromosome 14 Reference fCotGob3.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5'-RNA exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
oligoribonuclease, mitochondrial
Names
RNA exonuclease 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cottoperca gobio Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fCotGob3.1

Genomic

  1. NC_041368.1 Reference fCotGob3.1

    Range
    4043042..4046208
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029448244.1 → XP_029304104.1  oligoribonuclease, mitochondrial

    UniProtKB/TrEMBL
    A0A6J2R1E4
    Related
    ENSCGOP00000010490.1, ENSCGOT00000011375.1
    Conserved Domains (1) summary
    cd06135
    Location:81 → 253
    Orn; DEDDh 3'-5' exonuclease domain of oligoribonuclease and similar proteins
Nucleotide Protein
Heading Accession and Version

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