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sgcd sarcoglycan, delta (dystrophin-associated glycoprotein) [ Cottoperca gobio ]

Gene ID: 115018667, updated on 17-Mar-2024

Summary

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Gene symbol
sgcd
Gene description
sarcoglycan, delta (dystrophin-associated glycoprotein)
See related
Ensembl:ENSCGOG00000014790
Gene type
protein coding
RefSeq status
MODEL
Organism
Cottoperca gobio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Bovichtidae; Cottoperca
Orthologs
human zebrafish all
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Genomic context

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See sgcd in Genome Data Viewer
Location:
chromosome: 14
Exon count:
12
Annotation release Status Assembly Chr Location
100 current fCotGob3.1 (GCF_900634415.1) 14 NC_041368.1 (20846237..21075308)

Chromosome 14 - NC_041368.1Genomic Context describing neighboring genes Neighboring gene gem (nuclear organelle) associated protein 5 Neighboring gene CCR4-NOT transcription complex, subunit 8 Neighboring gene mitochondrial ribosomal protein L22 Neighboring gene uncharacterized LOC115019137 Neighboring gene rho GTPase-activating protein 7-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041368.1 Chromosome 14 Reference fCotGob3.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan
Names
sarcoglycan delta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cottoperca gobio Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fCotGob3.1

Genomic

  1. NC_041368.1 Reference fCotGob3.1

    Range
    20846237..21075308
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029447795.1 → XP_029303655.1  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A6J2R079
    Related
    ENSCGOP00000031824.1, ENSCGOT00000034237.1
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 279
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_029447797.1 → XP_029303657.1  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A6J2R079

  3. XM_029447796.1 → XP_029303656.1  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A6J2R079
    Related
    ENSCGOP00000031825.1, ENSCGOT00000034239.1

  4. XM_029447794.1 → XP_029303654.1  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A6J2R079

  5. XM_029447793.1 → XP_029303653.1  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A6J2R079
    Related
    ENSCGOP00000031847.1, ENSCGOT00000034262.1

  6. XM_029447792.1 → XP_029303652.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A6J2R2J3
    Related
    ENSCGOP00000031828.1, ENSCGOT00000034243.1
Nucleotide Protein
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