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LOC115013493 chondroitin sulfate N-acetylgalactosaminyltransferase 1-like [ Cottoperca gobio ]

Gene ID: 115013493, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115013493
Gene description
chondroitin sulfate N-acetylgalactosaminyltransferase 1-like
See related
Ensembl:ENSCGOG00000022160
Gene type
protein coding
RefSeq status
MODEL
Organism
Cottoperca gobio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Bovichtidae; Cottoperca
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Genomic context

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See LOC115013493 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
11
Annotation release Status Assembly Chr Location
100 current fCotGob3.1 (GCF_900634415.1) 9 NC_041363.1 (16037656..16046876, complement)

Chromosome 9 - NC_041363.1Genomic Context describing neighboring genes Neighboring gene ATP synthase subunit alpha, mitochondrial-like Neighboring gene phospholipid phosphatase 1-like Neighboring gene ring finger protein 122 Neighboring gene gamma-glutamyl hydrolase-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041363.1 Chromosome 9 Reference fCotGob3.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate N-acetylgalactosaminyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cottoperca gobio Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fCotGob3.1

Genomic

  1. NC_041363.1 Reference fCotGob3.1

    Range
    16037656..16046876 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029439835.1 → XP_029295695.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1-like

    UniProtKB/TrEMBL
    A0A6J2QE75
    Conserved Domains (1) summary
    cl11394
    Location:69 → 511
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. XM_029439836.1 → XP_029295696.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1-like

    UniProtKB/TrEMBL
    A0A6J2QE75
    Related
    ENSCGOP00000049866.1, ENSCGOT00000053209.1
Nucleotide Protein
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