U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

hcfc1a host cell factor C1a [ Cottoperca gobio ]

Gene ID: 115008727, updated on 17-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
hcfc1a
Gene description
host cell factor C1a
See related
Ensembl:ENSCGOG00000001124
Gene type
protein coding
RefSeq status
MODEL
Organism
Cottoperca gobio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Bovichtidae; Cottoperca
Also known as
hcfc1
Orthologs
zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See hcfc1a in Genome Data Viewer
Location:
chromosome: 5
Exon count:
28
Annotation release Status Assembly Chr Location
100 current fCotGob3.1 (GCF_900634415.1) 5 NC_041359.1 (6749164..6762616)

Chromosome 5 - NC_041359.1Genomic Context describing neighboring genes Neighboring gene blue-sensitive opsin-like Neighboring gene blue-sensitive opsin-like Neighboring gene uncharacterized LOC115008730 Neighboring gene GATA binding protein 1a

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_041359.1 Chromosome 5 Reference fCotGob3.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
host cell factor 1
Names
host cell factor C1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Cottoperca gobio Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fCotGob3.1

Genomic

  1. NC_041359.1 Reference fCotGob3.1

    Range
    6749164..6762616
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029432498.1 → XP_029288358.1  host cell factor 1

    UniProtKB/TrEMBL
    A0A6J2PQA8
    Related
    ENSCGOP00000002560.1, ENSCGOT00000002798.1
    Conserved Domains (5) summary
    PLN02153
    Location:13 → 334
    PLN02153; epithiospecifier protein
    PRK14951
    Location:407 → 537
    PRK14951; DNA polymerase III subunits gamma and tau; Provisional
    cd00063
    Location:1527 → 1556
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:201 → 254
    Kelch; KELCH repeat [structural motif]
    pfam13854
    Location:320 → 352
    Kelch_5; Kelch motif
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.