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LOC115004723 N-acetyllactosaminide alpha-1,3-galactosyltransferase-like [ Cottoperca gobio ]

Gene ID: 115004723, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115004723
Gene description
N-acetyllactosaminide alpha-1,3-galactosyltransferase-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Cottoperca gobio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Bovichtidae; Cottoperca
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Genomic context

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See LOC115004723 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
10
Annotation release Status Assembly Chr Location
100 current fCotGob3.1 (GCF_900634415.1) 3 NC_041357.1 (9785113..9794863, complement)

Chromosome 3 - NC_041357.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115003681 Neighboring gene small nucleolar RNA SNORD67 Neighboring gene low density lipoprotein receptor-related protein 4 Neighboring gene mitogen-activated protein kinase 8 interacting protein 1 Neighboring gene guanylyl cyclase-activating protein 2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041357.1 Chromosome 3 Reference fCotGob3.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
N-acetyllactosaminide alpha-1,3-galactosyltransferase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cottoperca gobio Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fCotGob3.1

Genomic

  1. NC_041357.1 Reference fCotGob3.1

    Range
    9785113..9794863 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029426413.1 → XP_029282273.1  N-acetyllactosaminide alpha-1,3-galactosyltransferase-like

    UniProtKB/TrEMBL
    A0A6J2PAP2

  2. XM_029426407.1 → XP_029282267.1  N-acetyllactosaminide alpha-1,3-galactosyltransferase-like

    UniProtKB/TrEMBL
    A0A6J2PAP2

  3. XM_029426406.1 → XP_029282266.1  N-acetyllactosaminide alpha-1,3-galactosyltransferase-like

    UniProtKB/TrEMBL
    A0A6J2PAP2
    Conserved Domains (1) summary
    cl11394
    Location:67 → 336
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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