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ckn CRK like proto-oncogene, adaptor protein [ Osmia bicornis bicornis ]

Gene ID: 114872652, updated on 1-Oct-2024

Summary

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Gene symbol
ckn
Gene description
CRK like proto-oncogene, adaptor protein
See related
EnsemblRapid:ENSOBBG00005009364
Gene type
protein coding
RefSeq status
MODEL
Organism
Osmia bicornis bicornis (sub-species: bicornis)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Megachilidae; Megachilinae; Osmia
Orthologs
honey bee all
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Genomic context

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See ckn in Genome Data Viewer
Location:
chromosome: 3
Exon count:
9
Annotation release Status Assembly Chr Location
101 current iOsmBic2.1 (GCF_907164935.1) 3 NC_060218.1 (1280050..1293905)
100 previous assembly Obicornis_v3 (GCF_004153925.1) Unplaced Scaffold NW_021683693.1 (396317..410181)

Chromosome 3 - NC_060218.1Genomic Context describing neighboring genes Neighboring gene probable methyltransferase-like protein 23 Neighboring gene sirtuin 7 Neighboring gene uncharacterized LOC114872659 Neighboring gene piggyBac transposable element-derived protein 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein phosphatase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axonogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell surface receptor protein tyrosine phosphatase signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
caskin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Osmia bicornis bicornis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference iOsmBic2.1

Genomic

  1. NC_060218.1 Reference iOsmBic2.1

    Range
    1280050..1293905
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029180071.2 → XP_029035904.1  caskin-1 isoform X3

    Related
    ENSOBBP00005013926.1, ENSOBBT00005022547.1
    Conserved Domains (3) summary
    cd09497
    Location:157 → 220
    SAM_caskin1,2_repeat1; SAM domain of caskin protein repeat 1
    pfam16632
    Location:630 → 666
    Caskin-tail; C-terminal region of Caskin
    cl15755
    Location:221 → 290
    SAM_superfamily; SAM (Sterile alpha motif )

  2. XM_046285064.1 → XP_046141020.1  caskin-1 isoform X2

    Related
    ENSOBBP00005013927.1, ENSOBBT00005022548.1

  3. XM_029180069.2 → XP_029035902.1  caskin-1 isoform X1

    Related
    ENSOBBP00005013931.1, ENSOBBT00005022545.1
    Conserved Domains (3) summary
    cd09497
    Location:273 → 336
    SAM_caskin1,2_repeat1; SAM domain of caskin protein repeat 1
    pfam16632
    Location:746 → 782
    Caskin-tail; C-terminal region of Caskin
    cl15755
    Location:337 → 406
    SAM_superfamily; SAM (Sterile alpha motif )
Nucleotide Protein
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