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sgcd sarcoglycan, delta (dystrophin-associated glycoprotein) [ Betta splendens (Siamese fighting fish) ]

Gene ID: 114869457, updated on 20-Aug-2024

Summary

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Gene symbol
sgcd
Gene description
sarcoglycan, delta (dystrophin-associated glycoprotein)
See related
EnsemblRapid:ENSBSLG00000008167
Gene type
protein coding
RefSeq status
MODEL
Organism
Betta splendens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Anabantiformes; Anabantoidei; Osphronemidae; Betta
Orthologs
human zebrafish all
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Genomic context

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See sgcd in Genome Data Viewer
Location:
chromosome: 14
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_04 current fBetSpl5.4 (GCF_900634795.4) 14 NC_040894.2 (1129127..1226953, complement)
101 previous assembly fBetSpl5.3 (GCF_900634795.3) 14 NC_040894.1 (1129131..1227074, complement)

Chromosome 14 - NC_040894.2Genomic Context describing neighboring genes Neighboring gene rho GTPase-activating protein 7 Neighboring gene arginyl-tRNA synthetase 1 Neighboring gene uncharacterized LOC129602965 Neighboring gene uncharacterized LOC114869487 Neighboring gene uncharacterized LOC129602971 Neighboring gene mitochondrial ribosomal protein L22

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan
Names
sarcoglycan delta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_900634795.4-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fBetSpl5.4 Primary Assembly

Genomic

  1. NC_040894.2 Reference fBetSpl5.4 Primary Assembly

    Range
    1129127..1226953 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029173727.3 → XP_029029560.1  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A6P7PBH6
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 279
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_029173726.3 → XP_029029559.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A6P7PS22
    Related
    ENSBSLP00000015523.1, ENSBSLT00000017538.2
    Conserved Domains (1) summary
    pfam04790
    Location:32 → 289
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_055502134.1 → XP_055358109.1  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A6P7PBH6

  4. XM_055502135.1 → XP_055358110.1  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A6P7PBH6
Nucleotide Protein
Heading Accession and Version

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