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kirrel3b kirre like nephrin family adhesion molecule 3b [ Betta splendens (Siamese fighting fish) ]

Gene ID: 114868333, updated on 20-Aug-2024

Summary

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Gene symbol
kirrel3b
Gene description
kirre like nephrin family adhesion molecule 3b
See related
EnsemblRapid:ENSBSLG00000005186
Gene type
protein coding
RefSeq status
MODEL
Organism
Betta splendens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Anabantiformes; Anabantoidei; Osphronemidae; Betta
Also known as
kirrel3
Orthologs
zebrafish all
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Genomic context

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See kirrel3b in Genome Data Viewer
Location:
chromosome: 13
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2023_04 current fBetSpl5.4 (GCF_900634795.4) 13 NC_040893.2 (13049639..13177714, complement)
101 previous assembly fBetSpl5.3 (GCF_900634795.3) 13 NC_040893.1 (13235631..13363709, complement)

Chromosome 13 - NC_040893.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129605058 Neighboring gene uncharacterized LOC129605085 Neighboring gene uncharacterized LOC129605016 Neighboring gene somatolactin alpha

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 3
Names
kirre like nephrin family adhesion molecule 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_900634795.4-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fBetSpl5.4 Primary Assembly

Genomic

  1. NC_040893.2 Reference fBetSpl5.4 Primary Assembly

    Range
    13049639..13177714 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_055514317.1 → XP_055370292.1  kin of IRRE-like protein 3 isoform X5

    UniProtKB/TrEMBL
    A0A9W2Y8K7
    Related
    ENSBSLP00000011745.2, ENSBSLT00000013235.3

  2. XM_055514315.1 → XP_055370290.1  kin of IRRE-like protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A9W2Y8V9

  3. XM_055514320.1 → XP_055370295.1  kin of IRRE-like protein 3 isoform X8

    UniProtKB/TrEMBL
    A0A9W2Y8R9

  4. XM_055514316.1 → XP_055370291.1  kin of IRRE-like protein 3 isoform X4

    UniProtKB/TrEMBL
    A0A9W2Y8J5

  5. XM_055514319.1 → XP_055370294.1  kin of IRRE-like protein 3 isoform X7

    UniProtKB/TrEMBL
    A0A9W2Y895

  6. XM_055514318.1 → XP_055370293.1  kin of IRRE-like protein 3 isoform X6

    UniProtKB/TrEMBL
    A0A9W2Y8E5

  7. XM_055514314.1 → XP_055370289.1  kin of IRRE-like protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A9W2Y8N8

  8. XM_029171798.3 → XP_029027631.1  kin of IRRE-like protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A6P7PC87
    Conserved Domains (5) summary
    cd05759
    Location:135 → 220
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:392 → 489
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00409
    Location:24 → 113
    IG; Immunoglobulin
    pfam13895
    Location:228 → 305
    Ig_2; Immunoglobulin domain
    pfam07679
    Location:309 → 390
    I-set; Immunoglobulin I-set domain

  9. XM_055514321.1 → XP_055370296.1  kin of IRRE-like protein 3 isoform X9

    UniProtKB/TrEMBL
    A0A9W2Y8C2
    Related
    ENSBSLP00000011763.2, ENSBSLT00000013253.3

  10. XM_055514322.1 → XP_055370297.1  kin of IRRE-like protein 3 isoform X10

    UniProtKB/TrEMBL
    A0A9W2Y8J6
Nucleotide Protein
Heading Accession and Version

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