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st8sia5 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 [ Betta splendens (Siamese fighting fish) ]

Gene ID: 114866747, updated on 20-Aug-2024

Summary

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Gene symbol
st8sia5
Gene description
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5
See related
EnsemblRapid:ENSBSLG00000017697
Gene type
protein coding
RefSeq status
MODEL
Organism
Betta splendens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Anabantiformes; Anabantoidei; Osphronemidae; Betta
Orthologs
human zebrafish all
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Genomic context

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See st8sia5 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_04 current fBetSpl5.4 (GCF_900634795.4) 12 NC_040892.2 (7485289..7494475)
101 previous assembly fBetSpl5.3 (GCF_900634795.3) 12 NC_040892.1 (7485297..7494475)

Chromosome 12 - NC_040892.2Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD72 Neighboring gene small nucleolar RNA SNORD72 Neighboring gene ribosomal protein L37 Neighboring gene lipoxygenase homology PLAT domains 1a Neighboring gene arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2Ca

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-glycan processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in oligosaccharide metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-2,8-sialyltransferase 8E

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_900634795.4-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fBetSpl5.4 Primary Assembly

Genomic

  1. NC_040892.2 Reference fBetSpl5.4 Primary Assembly

    Range
    7485289..7494475
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029168863.3 → XP_029024696.1  alpha-2,8-sialyltransferase 8E isoform X1

    UniProtKB/TrEMBL
    A0A6P7NXQ0
    Related
    ENSBSLP00000036279.1, ENSBSLT00000040068.2
    Conserved Domains (1) summary
    pfam00777
    Location:190 → 442
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  2. XM_029168864.3 → XP_029024697.1  alpha-2,8-sialyltransferase 8E isoform X2

    UniProtKB/TrEMBL
    A0A6P7NXL4
    Related
    ENSBSLP00000066991.1, ENSBSLT00000073947.1
    Conserved Domains (1) summary
    pfam00777
    Location:158 → 410
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  3. XM_029168865.3 → XP_029024698.1  alpha-2,8-sialyltransferase 8E isoform X3

    UniProtKB/TrEMBL
    A0A6P7P3B8
    Related
    ENSBSLP00000036313.1, ENSBSLT00000040102.3
    Conserved Domains (1) summary
    pfam00777
    Location:122 → 374
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
Nucleotide Protein
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