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pleca plectin a [ Betta splendens (Siamese fighting fish) ]

Gene ID: 114865412, updated on 22-May-2024

Summary

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Gene symbol
pleca
Gene description
plectin a
See related
EnsemblRapid:ENSBSLG00000011095
Gene type
protein coding
RefSeq status
MODEL
Organism
Betta splendens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Anabantiformes; Anabantoidei; Osphronemidae; Betta
Orthologs
zebrafish all
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Genomic context

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See pleca in Genome Data Viewer
Location:
chromosome: 11
Exon count:
48
Annotation release Status Assembly Chr Location
RS_2023_04 current fBetSpl5.4 (GCF_900634795.4) 11 NC_040891.2 (13655514..13716440, complement)
101 previous assembly fBetSpl5.3 (GCF_900634795.3) 11 NC_040891.1 (13764456..13825117, complement)

Chromosome 11 - NC_040891.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114865422 Neighboring gene uncharacterized LOC114865419 Neighboring gene doublesex- and mab-3-related transcription factor 1-like Neighboring gene uncharacterized LOC114865420 Neighboring gene eukaryotic translation initiation factor 3, subunit E, b Neighboring gene transmembrane protein 74

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ankyrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hemidesmosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in hemidesmosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plectin a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_900634795.4-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fBetSpl5.4 Primary Assembly

Genomic

  1. NC_040891.2 Reference fBetSpl5.4 Primary Assembly

    Range
    13655514..13716440 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029166520.3 → XP_029022353.1  plectin a isoform X2

    UniProtKB/TrEMBL
    A0A6P7NWK3
    Conserved Domains (8) summary
    PTZ00121
    Location:1952 → 2821
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:698 → 791
    SPEC; Spectrin repeats
    smart00250
    Location:2956 → 2990
    PLEC; Plectin repeat
    COG5069
    Location:195 → 429
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:793 → 983
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:4226 → 4265
    Plectin; Plectin repeat
    pfam15921
    Location:1178 → 1859
    CCDC158; Coiled-coil domain-containing protein 158
    cl27652
    Location:3575 → 3614
    Plectin; Plectin repeat

  2. XM_055512834.1 → XP_055368809.1  plectin a isoform X8

    UniProtKB/TrEMBL
    A0A9W2Y4E5

  3. XM_055512833.1 → XP_055368808.1  plectin a isoform X7

    UniProtKB/TrEMBL
    A0A9W2Y449

  4. XM_055512831.1 → XP_055368806.1  plectin a isoform X4

    UniProtKB/TrEMBL
    A0A9W2Y3V5

  5. XM_055512832.1 → XP_055368807.1  plectin a isoform X5

    UniProtKB/TrEMBL
    A0A9W2Y4B3

  6. XM_055512830.1 → XP_055368805.1  plectin a isoform X3

    UniProtKB/TrEMBL
    A0A9W2Y4M3

  7. XM_055512829.1 → XP_055368804.1  plectin a isoform X1

    UniProtKB/TrEMBL
    A0A9W2Y481

  8. XM_029166525.3 → XP_029022358.1  plectin a isoform X9

    UniProtKB/TrEMBL
    A0A6P7NWK8
    Conserved Domains (8) summary
    PTZ00121
    Location:1925 → 2794
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:686 → 779
    SPEC; Spectrin repeats
    smart00250
    Location:2929 → 2963
    PLEC; Plectin repeat
    COG5069
    Location:195 → 417
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:781 → 971
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:4199 → 4238
    Plectin; Plectin repeat
    pfam15921
    Location:1151 → 1832
    CCDC158; Coiled-coil domain-containing protein 158
    cl27652
    Location:3548 → 3587
    Plectin; Plectin repeat

  9. XM_029166522.3 → XP_029022355.1  plectin a isoform X6

    UniProtKB/TrEMBL
    A0A6P7NWJ1
    Conserved Domains (8) summary
    PTZ00121
    Location:1940 → 2809
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:686 → 779
    SPEC; Spectrin repeats
    smart00250
    Location:2944 → 2978
    PLEC; Plectin repeat
    COG5069
    Location:195 → 417
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:781 → 971
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:4214 → 4253
    Plectin; Plectin repeat
    pfam15921
    Location:1166 → 1847
    CCDC158; Coiled-coil domain-containing protein 158
    cl27652
    Location:3563 → 3602
    Plectin; Plectin repeat

  10. XM_055512835.1 → XP_055368810.1  plectin a isoform X10

    UniProtKB/TrEMBL
    A0A9W2Y4G8

  11. XM_055512836.1 → XP_055368811.1  plectin a isoform X10

    UniProtKB/TrEMBL
    A0A9W2Y4G8

  12. XM_029166529.3 → XP_029022362.1  plectin a isoform X19

    UniProtKB/TrEMBL
    A0A6P7NR39
    Related
    ENSBSLP00000062852.1
    Conserved Domains (8) summary
    PTZ00121
    Location:1787 → 2656
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:533 → 626
    SPEC; Spectrin repeats
    smart00250
    Location:2791 → 2825
    PLEC; Plectin repeat
    COG5069
    Location:35 → 264
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:628 → 818
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:4061 → 4100
    Plectin; Plectin repeat
    pfam15921
    Location:1013 → 1694
    CCDC158; Coiled-coil domain-containing protein 158
    cl27652
    Location:3410 → 3449
    Plectin; Plectin repeat

  13. XM_055512841.1 → XP_055368816.1  plectin a isoform X17

    UniProtKB/TrEMBL
    A0A9W2Y3W8

  14. XM_029166531.3 → XP_029022364.1  plectin a isoform X25

    UniProtKB/TrEMBL
    A0A6P7NXY3
    Related
    ENSBSLP00000067762.1
    Conserved Domains (8) summary
    PTZ00121
    Location:1772 → 2641
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:518 → 611
    SPEC; Spectrin repeats
    smart00250
    Location:2776 → 2810
    PLEC; Plectin repeat
    COG5069
    Location:20 → 249
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:613 → 803
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:4046 → 4085
    Plectin; Plectin repeat
    pfam15921
    Location:998 → 1679
    CCDC158; Coiled-coil domain-containing protein 158
    cl27652
    Location:3395 → 3434
    Plectin; Plectin repeat

  15. XM_055512843.1 → XP_055368818.1  plectin a isoform X22

    UniProtKB/TrEMBL
    A0A9W2Y462

  16. XM_055512844.1 → XP_055368819.1  plectin a isoform X23

    UniProtKB/TrEMBL
    A0A9W2Y4F7

  17. XM_055512845.1 → XP_055368820.1  plectin a isoform X24

    UniProtKB/TrEMBL
    A0A9W2Y4H8

  18. XM_029166532.3 → XP_029022365.1  plectin a isoform X26

    UniProtKB/TrEMBL
    A0A6P7NWK1
    Related
    ENSBSLP00000032939.2
    Conserved Domains (8) summary
    PTZ00121
    Location:1770 → 2639
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:516 → 609
    SPEC; Spectrin repeats
    smart00250
    Location:2774 → 2808
    PLEC; Plectin repeat
    COG5069
    Location:18 → 247
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:611 → 801
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:4044 → 4083
    Plectin; Plectin repeat
    pfam15921
    Location:996 → 1677
    CCDC158; Coiled-coil domain-containing protein 158
    cl27652
    Location:3393 → 3432
    Plectin; Plectin repeat

  19. XM_029166528.3 → XP_029022361.1  plectin a isoform X18

    UniProtKB/TrEMBL
    A0A6P7NR35
    Related
    ENSBSLP00000060038.1
    Conserved Domains (8) summary
    PTZ00121
    Location:1791 → 2660
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:537 → 630
    SPEC; Spectrin repeats
    smart00250
    Location:2795 → 2829
    PLEC; Plectin repeat
    COG5069
    Location:34 → 268
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:632 → 822
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:4065 → 4104
    Plectin; Plectin repeat
    pfam15921
    Location:1017 → 1698
    CCDC158; Coiled-coil domain-containing protein 158
    cl27652
    Location:3414 → 3453
    Plectin; Plectin repeat

  20. XM_055512839.1 → XP_055368814.1  plectin a isoform X15

    UniProtKB/TrEMBL
    A0A9W2Y495

  21. XM_029166533.3 → XP_029022366.1  plectin a isoform X28

    UniProtKB/TrEMBL
    A0A6P7NR41
    Conserved Domains (8) summary
    PTZ00121
    Location:1764 → 2633
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:525 → 618
    SPEC; Spectrin repeats
    smart00250
    Location:2768 → 2802
    PLEC; Plectin repeat
    COG5069
    Location:34 → 256
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:620 → 810
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:4038 → 4077
    Plectin; Plectin repeat
    pfam15921
    Location:990 → 1671
    CCDC158; Coiled-coil domain-containing protein 158
    cl27652
    Location:3387 → 3426
    Plectin; Plectin repeat

  22. XM_029166527.3 → XP_029022360.1  plectin a isoform X13

    UniProtKB/TrEMBL
    A0A6P7NWJ6
    Conserved Domains (8) summary
    PTZ00121
    Location:1799 → 2668
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:553 → 646
    SPEC; Spectrin repeats
    smart00250
    Location:2803 → 2837
    PLEC; Plectin repeat
    COG5069
    Location:50 → 284
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:648 → 838
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:4073 → 4112
    Plectin; Plectin repeat
    pfam15921
    Location:1025 → 1706
    CCDC158; Coiled-coil domain-containing protein 158
    cl27652
    Location:3422 → 3461
    Plectin; Plectin repeat

  23. XM_029166534.3 → XP_029022367.1  plectin a isoform X12

    UniProtKB/TrEMBL
    A0A6P7NR46
    Related
    ENSBSLP00000032975.1
    Conserved Domains (8) summary
    PTZ00121
    Location:1807 → 2676
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:553 → 646
    SPEC; Spectrin repeats
    smart00250
    Location:2811 → 2845
    PLEC; Plectin repeat
    COG5069
    Location:50 → 284
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:648 → 838
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:4081 → 4120
    Plectin; Plectin repeat
    pfam15921
    Location:1033 → 1714
    CCDC158; Coiled-coil domain-containing protein 158
    cl27652
    Location:3430 → 3469
    Plectin; Plectin repeat

  24. XM_055512837.1 → XP_055368812.1  plectin a isoform X11

    UniProtKB/TrEMBL
    A0A9W2Y4C6

  25. XM_029166530.3 → XP_029022363.1  plectin a isoform X21

    UniProtKB/TrEMBL
    A0A6P7NWL3
    Conserved Domains (8) summary
    PTZ00121
    Location:1780 → 2649
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:541 → 634
    SPEC; Spectrin repeats
    smart00250
    Location:2784 → 2818
    PLEC; Plectin repeat
    COG5069
    Location:50 → 272
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:636 → 826
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:4054 → 4093
    Plectin; Plectin repeat
    pfam15921
    Location:1006 → 1687
    CCDC158; Coiled-coil domain-containing protein 158
    cl27652
    Location:3403 → 3442
    Plectin; Plectin repeat

  26. XM_055512842.1 → XP_055368817.1  plectin a isoform X20

    UniProtKB/TrEMBL
    A0A9W2Y4C5

  27. XM_055512840.1 → XP_055368815.1  plectin a isoform X16

    UniProtKB/TrEMBL
    A0A9W2Y4N4

  28. XM_055512838.1 → XP_055368813.1  plectin a isoform X14

    UniProtKB/TrEMBL
    A0A9W2Y4B0

  29. XM_055512846.1 → XP_055368821.1  plectin a isoform X27

    UniProtKB/TrEMBL
    A0A9W2Y4D5
Nucleotide Protein
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