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washc4 WASH complex subunit 4 [ Betta splendens (Siamese fighting fish) ]

Gene ID: 114856894, updated on 20-Aug-2024

Summary

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Gene symbol
washc4
Gene description
WASH complex subunit 4
See related
EnsemblRapid:ENSBSLG00000009433
Gene type
protein coding
RefSeq status
MODEL
Organism
Betta splendens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Anabantiformes; Anabantoidei; Osphronemidae; Betta
Orthologs
human zebrafish all
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Genomic context

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See washc4 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
33
Annotation release Status Assembly Chr Location
RS_2023_04 current fBetSpl5.4 (GCF_900634795.4) 6 NC_040886.2 (6957227..6966977, complement)
101 previous assembly fBetSpl5.3 (GCF_900634795.3) 6 NC_040886.1 (7119392..7129140, complement)

Chromosome 6 - NC_040886.2Genomic Context describing neighboring genes Neighboring gene leucine rich repeat containing 10 Neighboring gene CCR4-NOT transcription complex, subunit 2 Neighboring gene solute carrier family 41 member 2a Neighboring gene uncharacterized LOC129604208 Neighboring gene uncharacterized si:ch211-106e7.2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endosomal transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of WASH complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WASH complex subunit 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_900634795.4-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fBetSpl5.4 Primary Assembly

Genomic

  1. NC_040886.2 Reference fBetSpl5.4 Primary Assembly

    Range
    6957227..6966977 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029152760.3 → XP_029008593.1  WASH complex subunit 4

    UniProtKB/TrEMBL
    A0A6P7MQJ6
    Related
    ENSBSLP00000019793.1, ENSBSLT00000022179.3
    Conserved Domains (3) summary
    pfam14744
    Location:612 → 945
    WASH-7_mid; WASH complex subunit 7
    pfam14745
    Location:33 → 600
    WASH-7_N; WASH complex subunit 7, N-terminal
    pfam14746
    Location:966 → 1135
    WASH-7_C; WASH complex subunit 7, C-terminal
Nucleotide Protein
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Gene LinkOut

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