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LOC114854069 torsin-1A-interacting protein 2-like [ Betta splendens (Siamese fighting fish) ]

Gene ID: 114854069, updated on 20-Aug-2024

Summary

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Gene symbol
LOC114854069
Gene description
torsin-1A-interacting protein 2-like
See related
EnsemblRapid:ENSBSLG00000000856
Gene type
protein coding
RefSeq status
MODEL
Organism
Betta splendens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Anabantiformes; Anabantoidei; Osphronemidae; Betta
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Genomic context

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See LOC114854069 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_04 current fBetSpl5.4 (GCF_900634795.4) 4 NC_040884.2 (6027800..6032103)
101 previous assembly fBetSpl5.3 (GCF_900634795.3) 4 NC_040884.1 (6291318..6295617)

Chromosome 4 - NC_040884.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114854066 Neighboring gene torsin-1A-interacting protein 1-like Neighboring gene olfactomedin-like 2Ba Neighboring gene activating transcription factor 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
torsin-1A-interacting protein 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_900634795.4-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fBetSpl5.4 Primary Assembly

Genomic

  1. NC_040884.2 Reference fBetSpl5.4 Primary Assembly

    Range
    6027800..6032103
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029148141.3 → XP_029003974.1  torsin-1A-interacting protein 2-like isoform X1

    UniProtKB/TrEMBL
    A0A6P7MDI5
    Related
    ENSBSLP00000001259.1, ENSBSLT00000001583.3
    Conserved Domains (1) summary
    pfam05609
    Location:263 → 477
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  2. XM_029148142.3 → XP_029003975.1  torsin-1A-interacting protein 2-like isoform X2

    UniProtKB/TrEMBL
    A0A6P7MBJ0
    Conserved Domains (1) summary
    pfam05609
    Location:262 → 476
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)
Nucleotide Protein
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