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asph aspartate beta-hydroxylase [ Betta splendens (Siamese fighting fish) ]

Gene ID: 114844708, updated on 20-Aug-2024

Summary

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Gene symbol
asph
Gene description
aspartate beta-hydroxylase
See related
EnsemblRapid:ENSBSLG00000022467
Gene type
protein coding
RefSeq status
MODEL
Organism
Betta splendens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Anabantiformes; Anabantoidei; Osphronemidae; Betta
Orthologs
human zebrafish all
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Genomic context

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See asph in Genome Data Viewer
Location:
chromosome: 17
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2023_04 current fBetSpl5.4 (GCF_900634795.4) 17 NC_040897.2 (5243147..5260658)
101 previous assembly fBetSpl5.3 (GCF_900634795.3) 17 NC_040897.1 (5932576..5944820)

Chromosome 17 - NC_040897.2Genomic Context describing neighboring genes Neighboring gene xenotropic and polytropic retrovirus receptor 1 homolog Neighboring gene tocopherol (alpha) transfer protein Neighboring gene uncharacterized LOC129603340 Neighboring gene cysteine/serine-rich nuclear protein 1-like Neighboring gene Golgi reassembly-stacking protein 1-like Neighboring gene WD repeat-containing protein 48

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_900634795.4-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fBetSpl5.4 Primary Assembly

Genomic

  1. NC_040897.2 Reference fBetSpl5.4 Primary Assembly

    Range
    5243147..5260658
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_055503978.1 → XP_055359953.1  aspartyl/asparaginyl beta-hydroxylase isoform X3

    UniProtKB/TrEMBL
    A0A9W2XE84
    Related
    ENSBSLP00000047165.3, ENSBSLT00000051763.3

  2. XM_055503981.1 → XP_055359956.1  aspartyl/asparaginyl beta-hydroxylase isoform X6

    UniProtKB/TrEMBL
    A0A9W2XDB7

  3. XM_055503980.1 → XP_055359955.1  aspartyl/asparaginyl beta-hydroxylase isoform X5

    UniProtKB/TrEMBL
    A0A9W2XEB8
    Related
    ENSBSLP00000047131.2, ENSBSLT00000051728.3

  4. XM_055503979.1 → XP_055359954.1  aspartyl/asparaginyl beta-hydroxylase isoform X4

    UniProtKB/TrEMBL
    A0A9W2XE00
    Related
    ENSBSLP00000078476.1, ENSBSLT00000094958.1

  5. XM_055503975.1 → XP_055359950.1  aspartyl/asparaginyl beta-hydroxylase isoform X1

    UniProtKB/TrEMBL
    A0A9W2XEA6

  6. XM_055503977.1 → XP_055359952.1  aspartyl/asparaginyl beta-hydroxylase isoform X2

    UniProtKB/TrEMBL
    A0A9W2XE66

  7. XM_055503976.1 → XP_055359951.1  aspartyl/asparaginyl beta-hydroxylase isoform X2

    UniProtKB/TrEMBL
    A0A9W2XE66
    Related
    ENSBSLP00000047184.1, ENSBSLT00000051782.3

RNA

  1. XR_008693114.1 RNA Sequence

  2. XR_008693115.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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