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kirrel1b kirre like nephrin family adhesion molecule 1b [ Betta splendens (Siamese fighting fish) ]

Gene ID: 114844513, updated on 20-Aug-2024

Summary

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Gene symbol
kirrel1b
Gene description
kirre like nephrin family adhesion molecule 1b
See related
EnsemblRapid:ENSBSLG00000006766
Gene type
protein coding
RefSeq status
MODEL
Organism
Betta splendens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Anabantiformes; Anabantoidei; Osphronemidae; Betta
Orthologs
zebrafish all
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Genomic context

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See kirrel1b in Genome Data Viewer
Location:
chromosome: 17
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_04 current fBetSpl5.4 (GCF_900634795.4) 17 NC_040897.2 (11761607..11808755, complement)
101 previous assembly fBetSpl5.3 (GCF_900634795.3) 17 NC_040897.1 (12446723..12493876, complement)

Chromosome 17 - NC_040897.2Genomic Context describing neighboring genes Neighboring gene oocyte zinc finger protein XlCOF6.1-like Neighboring gene zinc finger protein OZF-like Neighboring gene zinc finger protein OZF-like Neighboring gene uncharacterized LOC121201807 Neighboring gene cell adhesion molecule 3 Neighboring gene uncharacterized LOC121201806 Neighboring gene transfer RNA arginine (anticodon UCU)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 1b
Names
kin of IRRE-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_900634795.4-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fBetSpl5.4 Primary Assembly

Genomic

  1. NC_040897.2 Reference fBetSpl5.4 Primary Assembly

    Range
    11761607..11808755 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029131958.3 → XP_028987791.1  kin of IRRE-like protein 1b isoform X2

    UniProtKB/TrEMBL
    A0A6P7KZE9
    Related
    ENSBSLP00000013992.1, ENSBSLT00000015855.3
    Conserved Domains (4) summary
    cd05898
    Location:389 → 492
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00410
    Location:25 → 114
    IG_like; Immunoglobulin like
    pfam13927
    Location:306 → 371
    Ig_3; Immunoglobulin domain
    cl11960
    Location:137 → 217
    Ig; Immunoglobulin domain

  2. XM_029131957.3 → XP_028987790.1  kin of IRRE-like protein 1b isoform X1

    UniProtKB/TrEMBL
    A0A6P7L1K0
    Related
    ENSBSLP00000013854.1, ENSBSLT00000015672.3
    Conserved Domains (4) summary
    cd05898
    Location:389 → 492
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00410
    Location:25 → 114
    IG_like; Immunoglobulin like
    pfam13927
    Location:306 → 371
    Ig_3; Immunoglobulin domain
    cl11960
    Location:137 → 217
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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