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plecb plectin b [ Betta splendens (Siamese fighting fish) ]

Gene ID: 114843202, updated on 22-May-2024

Summary

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Gene symbol
plecb
Gene description
plectin b
See related
EnsemblRapid:ENSBSLG00000017188
Gene type
protein coding
RefSeq status
MODEL
Organism
Betta splendens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Anabantiformes; Anabantoidei; Osphronemidae; Betta
Orthologs
zebrafish all
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Genomic context

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See plecb in Genome Data Viewer
Location:
chromosome: 16
Exon count:
44
Annotation release Status Assembly Chr Location
RS_2023_04 current fBetSpl5.4 (GCF_900634795.4) 16 NC_040896.2 (19388744..19467487, complement)
101 previous assembly fBetSpl5.3 (GCF_900634795.3) 16 NC_040896.1 (19563652..19640788, complement)

Chromosome 16 - NC_040896.2Genomic Context describing neighboring genes Neighboring gene riboflavin transporter 2-like Neighboring gene microtubule actin crosslinking factor 1b Neighboring gene R-spondin 2 Neighboring gene eukaryotic translation initiation factor 3, subunit E, a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ankyrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hemidesmosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in hemidesmosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plectin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_900634795.4-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fBetSpl5.4 Primary Assembly

Genomic

  1. NC_040896.2 Reference fBetSpl5.4 Primary Assembly

    Range
    19388744..19467487 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_055503462.1 → XP_055359437.1  plectin isoform X22

    UniProtKB/TrEMBL
    A0A9W2XCI1

  2. XM_055503451.1 → XP_055359426.1  plectin isoform X8

    UniProtKB/TrEMBL
    A0A9W2XBW7

  3. XM_029129523.3 → XP_028985356.1  plectin isoform X9

    UniProtKB/TrEMBL
    A0A6P7KSE2
    Related
    ENSBSLP00000036657.2
    Conserved Domains (10) summary
    pfam05483
    Location:1055 → 1469
    SCP-1; Synaptonemal complex protein 1 (SCP-1)
    PTZ00121
    Location:1301 → 2158
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:548 → 642
    SPEC; Spectrin repeats
    smart00250
    Location:4007 → 4038
    PLEC; Plectin repeat
    COG5069
    Location:64 → 286
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    PRK00409
    Location:2523 → 2711
    PRK00409; recombination and DNA strand exchange inhibitor protein; Reviewed
    cd00176
    Location:644 → 830
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    TIGR02168
    Location:392 → 660
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam00681
    Location:4045 → 4085
    Plectin; Plectin repeat
    cl17036
    Location:835 → 879
    SH3; Src Homology 3 domain superfamily

  4. XM_055503461.1 → XP_055359436.1  plectin isoform X21

    UniProtKB/TrEMBL
    A0A9W2XBX8

  5. XM_055503454.1 → XP_055359429.1  plectin isoform X12

    UniProtKB/TrEMBL
    A0A9W2XCS3

  6. XM_055503458.1 → XP_055359433.1  plectin isoform X17

    UniProtKB/TrEMBL
    A0A9W2XCR3

  7. XM_055503457.1 → XP_055359432.1  plectin isoform X15

    UniProtKB/TrEMBL
    A0A9W2XCM8

  8. XM_055503447.1 → XP_055359422.1  plectin isoform X1

    UniProtKB/TrEMBL
    A0A9W2XCL8

  9. XM_055503448.1 → XP_055359423.1  plectin isoform X2

    UniProtKB/TrEMBL
    A0A9W2XCQ4

  10. XM_029129519.3 → XP_028985352.1  plectin isoform X7

    UniProtKB/TrEMBL
    A0A6P7KRY5
    Related
    ENSBSLP00000036134.2
    Conserved Domains (12) summary
    pfam05483
    Location:2100 → 2514
    SCP-1; Synaptonemal complex protein 1 (SCP-1)
    PTZ00121
    Location:2346 → 3203
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:1593 → 1687
    SPEC; Spectrin repeats
    smart00250
    Location:5052 → 5083
    PLEC; Plectin repeat
    COG5069
    Location:1109 → 1331
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    PRK00409
    Location:3568 → 3756
    PRK00409; recombination and DNA strand exchange inhibitor protein; Reviewed
    cd00176
    Location:1689 → 1875
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    TIGR02168
    Location:1437 → 1705
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam05109
    Location:338 → 613
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam00681
    Location:5090 → 5130
    Plectin; Plectin repeat
    pfam03501
    Location:7 → 99
    S10_plectin; Plectin/S10 domain
    cl17036
    Location:1880 → 1924
    SH3; Src Homology 3 domain superfamily

  11. XM_029129518.3 → XP_028985351.1  plectin isoform X6

    UniProtKB/TrEMBL
    A0A6P7KSD7
    Related
    ENSBSLP00000036118.2
    Conserved Domains (12) summary
    pfam05483
    Location:2104 → 2518
    SCP-1; Synaptonemal complex protein 1 (SCP-1)
    PTZ00121
    Location:2350 → 3207
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:1597 → 1691
    SPEC; Spectrin repeats
    smart00250
    Location:5056 → 5087
    PLEC; Plectin repeat
    COG5069
    Location:1109 → 1335
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    PRK00409
    Location:3572 → 3760
    PRK00409; recombination and DNA strand exchange inhibitor protein; Reviewed
    cd00176
    Location:1693 → 1879
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    TIGR02168
    Location:1441 → 1709
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam05109
    Location:338 → 613
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam00681
    Location:5094 → 5134
    Plectin; Plectin repeat
    pfam03501
    Location:7 → 99
    S10_plectin; Plectin/S10 domain
    cl17036
    Location:1884 → 1928
    SH3; Src Homology 3 domain superfamily

  12. XM_055503450.1 → XP_055359425.1  plectin isoform X5

    UniProtKB/TrEMBL
    A0A9W2XCV4

  13. XM_055503449.1 → XP_055359424.1  plectin isoform X3

    UniProtKB/TrEMBL
    A0A9W2XCE6

  14. XM_029129514.3 → XP_028985347.1  plectin isoform X4

    UniProtKB/TrEMBL
    A0A6P7KRY0
    Conserved Domains (12) summary
    pfam05483
    Location:2116 → 2530
    SCP-1; Synaptonemal complex protein 1 (SCP-1)
    PTZ00121
    Location:2362 → 3219
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:1609 → 1703
    SPEC; Spectrin repeats
    smart00250
    Location:5068 → 5099
    PLEC; Plectin repeat
    COG5069
    Location:1109 → 1347
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    PRK00409
    Location:3584 → 3772
    PRK00409; recombination and DNA strand exchange inhibitor protein; Reviewed
    cd00176
    Location:1705 → 1891
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    TIGR02168
    Location:1453 → 1721
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam05109
    Location:338 → 613
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam00681
    Location:5106 → 5146
    Plectin; Plectin repeat
    pfam03501
    Location:7 → 99
    S10_plectin; Plectin/S10 domain
    cl17036
    Location:1896 → 1940
    SH3; Src Homology 3 domain superfamily

  15. XM_055503446.1 → XP_055359421.1  plectin isoform X1

    UniProtKB/TrEMBL
    A0A9W2XCL8

  16. XM_055503460.1 → XP_055359435.1  plectin isoform X19

    UniProtKB/TrEMBL
    A0A9W2XCW4

  17. XM_055503459.1 → XP_055359434.1  plectin isoform X18

    UniProtKB/TrEMBL
    A0A9W2XCF6

  18. XM_029129537.3 → XP_028985370.1  plectin isoform X20

    UniProtKB/TrEMBL
    A0A6P7KUV0
    Related
    ENSBSLP00000037098.1
    Conserved Domains (10) summary
    pfam05483
    Location:996 → 1410
    SCP-1; Synaptonemal complex protein 1 (SCP-1)
    PTZ00121
    Location:1242 → 2099
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:489 → 583
    SPEC; Spectrin repeats
    smart00250
    Location:3948 → 3979
    PLEC; Plectin repeat
    COG5069
    Location:10 → 227
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    PRK00409
    Location:2464 → 2652
    PRK00409; recombination and DNA strand exchange inhibitor protein; Reviewed
    cd00176
    Location:585 → 771
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    TIGR02168
    Location:333 → 601
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam00681
    Location:3986 → 4026
    Plectin; Plectin repeat
    cl17036
    Location:776 → 820
    SH3; Src Homology 3 domain superfamily

  19. XM_055503453.1 → XP_055359428.1  plectin isoform X11

    UniProtKB/TrEMBL
    A0A9W2XBY6

  20. XM_055503455.1 → XP_055359430.1  plectin isoform X13

    UniProtKB/TrEMBL
    A0A9W2XCS8

  21. XM_055503452.1 → XP_055359427.1  plectin isoform X10

    UniProtKB/TrEMBL
    A0A9W2XCH0

  22. XM_055503456.1 → XP_055359431.1  plectin isoform X14

    UniProtKB/TrEMBL
    A0A9W2XCJ8

  23. XM_029129530.3 → XP_028985363.1  plectin isoform X16

    UniProtKB/TrEMBL
    A0A6P7KS42
    Related
    ENSBSLP00000036444.2
    Conserved Domains (10) summary
    pfam05483
    Location:1030 → 1444
    SCP-1; Synaptonemal complex protein 1 (SCP-1)
    PTZ00121
    Location:1276 → 2133
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:523 → 617
    SPEC; Spectrin repeats
    smart00250
    Location:3982 → 4013
    PLEC; Plectin repeat
    COG5069
    Location:44 → 261
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    PRK00409
    Location:2498 → 2686
    PRK00409; recombination and DNA strand exchange inhibitor protein; Reviewed
    cd00176
    Location:619 → 805
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    TIGR02168
    Location:367 → 635
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam00681
    Location:4020 → 4060
    Plectin; Plectin repeat
    cl17036
    Location:810 → 854
    SH3; Src Homology 3 domain superfamily
Nucleotide Protein
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