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LOC114824468 probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [ Malus domestica (apple) ]

Gene ID: 114824468, updated on 22-Oct-2023

Summary

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Gene symbol
LOC114824468
Gene description
probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC
Gene type
protein coding
RefSeq status
MODEL
Organism
Malus domestica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus
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Genomic context

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See LOC114824468 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
28
Annotation release Status Assembly Chr Location
102 current ASM211411v1 (GCF_002114115.1) 4 NC_041792.1 (32122203..32130768)

Chromosome 4 - NC_041792.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114824467 Neighboring gene ankyrin repeat-containing protein BDA1-like Neighboring gene pentatricopeptide repeat-containing protein At5g18390, mitochondrial Neighboring gene U11/U12 small nuclear ribonucleoprotein 48 kDa protein Neighboring gene U-box domain-containing protein 9-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041792.1 Chromosome 4 Reference ASM211411v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Malus domestica Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM211411v1 Primary Assembly

Genomic

  1. NC_041792.1 Reference ASM211411v1 Primary Assembly

    Range
    32122203..32130768
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029101592.1 → XP_028957425.1  LOW QUALITY PROTEIN: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC

    Conserved Domains (3) summary
    TIGR02917
    Location:73 → 489
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:259 → 287
    TPR; TPR repeat [structural motif]
    cl10013
    Location:594 → 954
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
Nucleotide Protein
Heading Accession and Version

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