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Sgca sarcoglycan alpha [ Peromyscus leucopus (white-footed mouse) ]

Gene ID: 114692898, updated on 15-Mar-2024

Summary

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Gene symbol
Sgca
Gene description
sarcoglycan alpha
Gene type
protein coding
RefSeq status
MODEL
Organism
Peromyscus leucopus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Neotominae; Peromyscus
Orthologs
human mouse all
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Genomic context

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See Sgca in Genome Data Viewer
Location:
chromosome: 8b
Exon count:
11
Annotation release Status Assembly Chr Location
101 current UCI_PerLeu_2.1 (GCF_004664715.2) 8b NC_051086.1 (97849912..97863526)
100 previous assembly Pero_0.1 (GCF_004664715.1) Unplaced Scaffold NW_021630181.1 (5005896..5019507, complement)

Chromosome 8b - NC_051086.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119086973 Neighboring gene uncharacterized LOC119086972 Neighboring gene spermatid-specific linker histone H1-like protein Neighboring gene collagen type I alpha 1 chain Neighboring gene uncharacterized LOC119087059

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Peromyscus leucopus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCI_PerLeu_2.1 Primary Assembly

Genomic

  1. NC_051086.1 Reference UCI_PerLeu_2.1 Primary Assembly

    Range
    97849912..97863526
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028868979.2 → XP_028724812.1  alpha-sarcoglycan

    Conserved Domains (1) summary
    pfam05510
    Location:10 → 347
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  2. XM_037200778.1 → XP_037056673.1  alpha-sarcoglycan

    Conserved Domains (1) summary
    pfam05510
    Location:10 → 347
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  3. XM_037200777.1 → XP_037056672.1  alpha-sarcoglycan

    Conserved Domains (1) summary
    pfam05510
    Location:10 → 347
    Sarcoglycan_2; Sarcoglycan alpha/epsilon
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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