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Ubxn2b UBX domain protein 2B [ Peromyscus leucopus (white-footed mouse) ]

Gene ID: 114686686, updated on 15-Mar-2024

Summary

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Gene symbol
Ubxn2b
Gene description
UBX domain protein 2B
Gene type
protein coding
RefSeq status
MODEL
Organism
Peromyscus leucopus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Neotominae; Peromyscus
Orthologs
human mouse all
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Genomic context

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See Ubxn2b in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
101 current UCI_PerLeu_2.1 (GCF_004664715.2) 2 NC_051064.1 (24549023..24578285, complement)
100 previous assembly Pero_0.1 (GCF_004664715.1) Unplaced Scaffold NW_021630945.1 (41908..69171)

Chromosome 2 - NC_051064.1Genomic Context describing neighboring genes Neighboring gene cholesterol 7-alpha-monooxygenase Neighboring gene uncharacterized LOC119087380 Neighboring gene autophagy protein 5-like Neighboring gene small EDRK-rich factor 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in membrane fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear membrane reassembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UBX domain-containing protein 2B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Peromyscus leucopus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCI_PerLeu_2.1 Primary Assembly

Genomic

  1. NC_051064.1 Reference UCI_PerLeu_2.1 Primary Assembly

    Range
    24549023..24578285 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037202434.1 → XP_037058329.1  UBX domain-containing protein 2B isoform X2

    Conserved Domains (2) summary
    pfam08059
    Location:146 → 182
    SEP; SEP domain
    cl28922
    Location:204 → 285
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

  2. XM_037202433.1 → XP_037058328.1  UBX domain-containing protein 2B isoform X1

    Conserved Domains (2) summary
    smart00553
    Location:140 → 232
    SEP; Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47
    cl28922
    Location:250 → 331
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

  3. XM_037202432.1 → XP_037058327.1  UBX domain-containing protein 2B isoform X1

    Conserved Domains (2) summary
    smart00553
    Location:140 → 232
    SEP; Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47
    cl28922
    Location:250 → 331
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold
Nucleotide Protein
Heading Accession and Version

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