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Ecym_3023 Hypothetical protein [ Eremothecium cymbalariae DBVPG#7215 ]

Gene ID: 11468593, updated on 22-Oct-2023

Summary

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Gene symbol
Ecym_3023
Gene description
Hypothetical protein
Locus tag
Ecym_3023
Gene type
protein coding
RNA name
Hypothetical protein
RefSeq status
PROVISIONAL
Organism
Eremothecium cymbalariae DBVPG#7215 (strain: DBVPG#7215)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Eremothecium
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Genomic context

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See Ecym_3023 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_016451.1 (45641..46690, complement)

Chromosome 3 - NC_016451.1Genomic Context describing neighboring genes Neighboring gene Hypothetical protein Neighboring gene Neighboring gene Hypothetical protein Neighboring gene Hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_016451.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome evolution in the eremothecium clade of the Saccharomyces complex revealed by comparative genomics. Wendland J, et al. G3 (Bethesda), 2011 Dec. PMID 22384365, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 18S rRNA aminocarboxypropyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of SSU-rRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
Hypothetical protein
XP_003645356.1
  • similar to Ashbya gossypii ACR007W

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_016451.1 Reference assembly

    Range
    45641..46690 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003645308.1 → XP_003645356.1  Hypothetical protein Ecym_3023 [Eremothecium cymbalariae DBVPG#7215]

    See identical proteins and their annotated locations for XP_003645356.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    G8JQX0
    Conserved Domains (3) summary
    COG2042
    Location:40 → 212
    Tsr3; Ribosome biogenesis protein Tsr3 (rRNA maturation) [Translation, ribosomal structure and biogenesis]
    pfam04034
    Location:82 → 205
    DUF367; Domain of unknown function (DUF367)
    pfam04068
    Location:46 → 78
    RLI; Possible Fer4-like domain in RNase L inhibitor, RLI
Nucleotide Protein
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