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Tenm4 teneurin transmembrane protein 4 [ Peromyscus leucopus (white-footed mouse) ]

Gene ID: 114681478, updated on 15-Mar-2024

Summary

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Gene symbol
Tenm4
Gene description
teneurin transmembrane protein 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Peromyscus leucopus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Neotominae; Peromyscus
Orthologs
human mouse all
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Genomic context

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See Tenm4 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
41
Annotation release Status Assembly Chr Location
101 current UCI_PerLeu_2.1 (GCF_004664715.2) 1 NC_051063.1 (108224996..110955441, complement)
100 previous assembly Pero_0.1 (GCF_004664715.1) Unplaced Scaffold NW_021630639.1 (490374..1104656)

Chromosome 1 - NC_051063.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L15-like Neighboring gene probable asparagine--tRNA ligase, mitochondrial Neighboring gene uncharacterized LOC119088132 Neighboring gene non-histone chromosomal protein HMG-14 Neighboring gene mannose-binding protein C-like Neighboring gene U6 spliceosomal RNA Neighboring gene 60 kDa heat shock protein, mitochondrial-like Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene 60S acidic ribosomal protein P0-like Neighboring gene 14-3-3 protein eta-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein homodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: teneurin-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Peromyscus leucopus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCI_PerLeu_2.1 Primary Assembly

Genomic

  1. NC_051063.1 Reference UCI_PerLeu_2.1 Primary Assembly

    Range
    108224996..110955441 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037206447.1 → XP_037062342.1  LOW QUALITY PROTEIN: teneurin-4

    Conserved Domains (8) summary
    COG3209
    Location:1688 → 2384
    RhsA; Uncharacterized conserved protein RhsA, contains 28 RHS repeats [General function prediction only]
    cd05819
    Location:1318 → 1357
    NHL; NHL repeat [structural motif]
    TIGR03696
    Location:2468 → 2547
    Rhs_assc_core; RHS repeat-associated core domain
    cl18310
    Location:1308 → 1649
    NHL; NHL repeat unit of beta-propeller proteins
    pfam06484
    Location:36 → 435
    Ten_N; Teneurin Intracellular Region
    pfam15636
    Location:2771 → 2848
    Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin
    NF033662
    Location:919 → 949
    acid_disulf_rpt; acidic double-disulfide repeat
    NF033759
    Location:661 → 929
    exchanger_TraA; outer membrane exchange protein TraA
Nucleotide Protein
Heading Accession and Version

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