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Capn3 calpain 3 [ Peromyscus leucopus (white-footed mouse) ]

Gene ID: 114681123, updated on 15-Mar-2024

Summary

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Gene symbol
Capn3
Gene description
calpain 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Peromyscus leucopus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Neotominae; Peromyscus
Orthologs
human mouse all
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Genomic context

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See Capn3 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
24
Annotation release Status Assembly Chr Location
101 current UCI_PerLeu_2.1 (GCF_004664715.2) 4 NC_051066.1 (96363128..96397136)
100 previous assembly Pero_0.1 (GCF_004664715.1) Unplaced Scaffold NW_021630625.1 (269723..316297)

Chromosome 4 - NC_051066.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 87A Neighboring gene uncharacterized LOC119087880 Neighboring gene glucosidase alpha, neutral C Neighboring gene zinc finger protein 106 Neighboring gene synaptosome associated protein 23

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Peromyscus leucopus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCI_PerLeu_2.1 Primary Assembly

Genomic

  1. NC_051066.1 Reference UCI_PerLeu_2.1 Primary Assembly

    Range
    96363128..96397136
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037205157.1 → XP_037061052.1  calpain-3 isoform X5

    Conserved Domains (4) summary
    cd16190
    Location:633 → 801
    EFh_PEF_CAPN3; Calcium-activated neutral
    pfam00648
    Location:51 → 395
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:416 → 554
    Calpain_III; Calpain large subunit, domain III
    pfam16648
    Location:563 → 633
    Calpain_u2; Unstructured region on Calpain-3

  2. XM_037205152.1 → XP_037061047.1  calpain-3 isoform X1

    Conserved Domains (4) summary
    cd16190
    Location:585 → 753
    EFh_PEF_CAPN3; Calcium-activated neutral
    pfam00648
    Location:34 → 347
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:368 → 506
    Calpain_III; Calpain large subunit, domain III
    pfam16648
    Location:515 → 585
    Calpain_u2; Unstructured region on Calpain-3

  3. XM_037205154.1 → XP_037061049.1  calpain-3 isoform X2

    Conserved Domains (3) summary
    cd16190
    Location:541 → 737
    EFh_PEF_CAPN3; Calcium-activated neutral
    pfam00648
    Location:34 → 347
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:368 → 506
    Calpain_III; Calpain large subunit, domain III

  4. XM_037205155.1 → XP_037061050.1  calpain-3 isoform X3

    Conserved Domains (4) summary
    cd16190
    Location:537 → 705
    EFh_PEF_CAPN3; Calcium-activated neutral
    pfam00648
    Location:34 → 299
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:320 → 458
    Calpain_III; Calpain large subunit, domain III
    pfam16648
    Location:467 → 537
    Calpain_u2; Unstructured region on Calpain-3

  5. XM_037205156.1 → XP_037061051.1  calpain-3 isoform X4

    Conserved Domains (3) summary
    cd16190
    Location:493 → 661
    EFh_PEF_CAPN3; Calcium-activated neutral
    pfam00648
    Location:34 → 299
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:320 → 458
    Calpain_III; Calpain large subunit, domain III
Nucleotide Protein
Heading Accession and Version

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