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UBXN2B UBX domain protein 2B [ Podarcis muralis (Common wall lizard) ]

Gene ID: 114600584, updated on 15-Mar-2024

Summary

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Gene symbol
UBXN2B
Gene description
UBX domain protein 2B
See related
Ensembl:ENSPMRG00000008274
Gene type
protein coding
RefSeq status
MODEL
Organism
Podarcis muralis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Laterata; Lacertibaenia; Lacertidae; Podarcis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
9
Annotation release Status Assembly Chr Location
100 current PodMur_1.0 (GCF_004329235.1) 7 NC_041318.1 (38879252..38894876, complement)

Chromosome 7 - NC_041318.1Genomic Context describing neighboring genes Neighboring gene syndecan binding protein Neighboring gene cholesterol 7-alpha-monooxygenase Neighboring gene uncharacterized LOC114600433 Neighboring gene family with sequence similarity 110 member B

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041318.1 Chromosome 7 Reference PodMur_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in membrane fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear membrane reassembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UBX domain-containing protein 2B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Podarcis muralis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PodMur_1.0 Primary Assembly

Genomic

  1. NC_041318.1 Reference PodMur_1.0 Primary Assembly

    Range
    38879252..38894876 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028736893.1 → XP_028592726.1  UBX domain-containing protein 2B isoform X3

    UniProtKB/TrEMBL
    A0A670IJY3
    Conserved Domains (2) summary
    smart00553
    Location:125 → 217
    SEP; Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47
    cl28922
    Location:235 → 316
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

  2. XM_028736891.1 → XP_028592724.1  UBX domain-containing protein 2B isoform X1

    UniProtKB/TrEMBL
    A0A670IJY3, A0A670IMA9
    Related
    ENSPMRP00000012382.1, ENSPMRT00000013218.1
    Conserved Domains (2) summary
    smart00553
    Location:188 → 280
    SEP; Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47
    cl28922
    Location:298 → 379
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

  3. XM_028736892.1 → XP_028592725.1  UBX domain-containing protein 2B isoform X2

    UniProtKB/TrEMBL
    A0A670IJY3, A0A670IMB8
    Related
    ENSPMRP00000012392.1, ENSPMRT00000013228.1
    Conserved Domains (2) summary
    smart00553
    Location:171 → 263
    SEP; Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47
    cl28922
    Location:281 → 362
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold
Nucleotide Protein
Heading Accession and Version

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