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CH25H cholesterol 25-hydroxylase [ Podarcis muralis (Common wall lizard) ]

Gene ID: 114596710, updated on 15-Mar-2024

Summary

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Gene symbol
CH25H
Gene description
cholesterol 25-hydroxylase
Gene type
protein coding
RefSeq status
MODEL
Organism
Podarcis muralis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Laterata; Lacertibaenia; Lacertidae; Podarcis
Orthologs
human mouse all
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Genomic context

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See CH25H in Genome Data Viewer
Location:
chromosome: 5
Exon count:
1
Annotation release Status Assembly Chr Location
100 current PodMur_1.0 (GCF_004329235.1) 5 NC_041316.1 (34603342..34604840, complement)

Chromosome 5 - NC_041316.1Genomic Context describing neighboring genes Neighboring gene actin alpha 2, smooth muscle Neighboring gene Fas cell surface death receptor Neighboring gene putative lysosomal acid lipase/cholesteryl ester hydrolase Neighboring gene putative lysosomal acid lipase/cholesteryl ester hydrolase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041316.1 Chromosome 5 Reference PodMur_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables C-4 methylsterol oxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables steroid hydroxylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cholesterol metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sterol biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cholesterol 25-hydroxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Podarcis muralis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PodMur_1.0 Primary Assembly

Genomic

  1. NC_041316.1 Reference PodMur_1.0 Primary Assembly

    Range
    34603342..34604840 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028728458.1 → XP_028584291.1  cholesterol 25-hydroxylase

    UniProtKB/TrEMBL
    A0A670IBS6
    Conserved Domains (1) summary
    pfam04116
    Location:181 → 302
    FA_hydroxylase; Fatty acid hydroxylase superfamily
Nucleotide Protein
Heading Accession and Version

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