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ano5b anoctamin 5b [ Perca flavescens (yellow perch) ]

Gene ID: 114574087, updated on 15-Mar-2024

Summary

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Gene symbol
ano5b
Gene description
anoctamin 5b
Locus tag
EPR50_G00003890
Gene type
protein coding
RefSeq status
MODEL
Organism
Perca flavescens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Percinae; Perca
Orthologs
zebrafish all
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Genomic context

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See ano5b in Genome Data Viewer
Location:
chromosome: 1
Exon count:
24
Annotation release Status Assembly Chr Location
100 current PFLA_1.0 (GCF_004354835.1) 1 NC_041331.1 (21663534..21693973, complement)

Chromosome 1 - NC_041331.1Genomic Context describing neighboring genes Neighboring gene growth arrest-specific 2b Neighboring gene solute carrier family 17 member 6b Neighboring gene immunoglobulin superfamily, DCC subclass, member 3 Neighboring gene uncharacterized LOC114557774 Neighboring gene uncharacterized LOC114557780 Neighboring gene cartilage intermediate layer protein, nucleotide pyrophosphohydrolase Neighboring gene eukaryotic translation initiation factor 3, subunit Jb

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041331.1 Chromosome 1 Reference PFLA_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chloride channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chloride transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
anoctamin-5-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Perca flavescens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PFLA_1.0 Primary Assembly

Genomic

  1. NC_041331.1 Reference PFLA_1.0 Primary Assembly

    Range
    21663534..21693973 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028563575.1 → XP_028419376.1  anoctamin-5-like isoform X1

    Conserved Domains (2) summary
    pfam04547
    Location:294 → 877
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:74 → 291
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin

  2. XM_028563617.1 → XP_028419418.1  anoctamin-5-like isoform X2

    Conserved Domains (2) summary
    pfam04547
    Location:279 → 862
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:59 → 276
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin

  3. XM_028563514.1 → XP_028419315.1  anoctamin-5-like isoform X1

    Conserved Domains (2) summary
    pfam04547
    Location:294 → 877
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:74 → 291
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin

  4. XM_028563686.1 → XP_028419487.1  anoctamin-5-like isoform X3

    UniProtKB/TrEMBL
    A0A484DP01
    Conserved Domains (2) summary
    pfam04547
    Location:274 → 857
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:54 → 271
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin

  5. XM_028563750.1 → XP_028419551.1  anoctamin-5-like isoform X4

    Conserved Domains (2) summary
    pfam04547
    Location:272 → 855
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:52 → 269
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin

  6. XM_028563834.1 → XP_028419635.1  anoctamin-5-like isoform X5

    Conserved Domains (2) summary
    pfam04547
    Location:205 → 788
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:1 → 202
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin
Nucleotide Protein
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