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LOC114572953 exostosin-1-like [ Perca flavescens (yellow perch) ]

Gene ID: 114572953, updated on 15-Mar-2024

Summary

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Gene symbol
LOC114572953
Gene description
exostosin-1-like
Locus tag
EPR50_G00190740
Gene type
protein coding
RefSeq status
MODEL
Organism
Perca flavescens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Percinae; Perca
Orthologs
zebrafish all
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Genomic context

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See LOC114572953 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
13
Annotation release Status Assembly Chr Location
100 current PFLA_1.0 (GCF_004354835.1) 18 NC_041348.1 (25524441..25814157)

Chromosome 18 - NC_041348.1Genomic Context describing neighboring genes Neighboring gene scavenger receptor class A, member 5 (putative) Neighboring gene uncharacterized LOC114573291 Neighboring gene sterile alpha motif domain-containing protein 12-like Neighboring gene uncharacterized LOC114572956 Neighboring gene dicentracin-like Neighboring gene uncharacterized LOC114572955 Neighboring gene glyceronephosphate O-acyltransferase Neighboring gene 40S small subunit processome assembly factor 1 Neighboring gene tripartite motif containing 67

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041348.1 Chromosome 18 Reference PFLA_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exostosin-1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Perca flavescens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PFLA_1.0 Primary Assembly

Genomic

  1. NC_041348.1 Reference PFLA_1.0 Primary Assembly

    Range
    25524441..25814157
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028604770.1 → XP_028460571.1  exostosin-1-like

    Conserved Domains (3) summary
    pfam14179
    Location:31 → 88
    YppG; YppG-like protein
    pfam03016
    Location:136 → 422
    Exostosin; Exostosin family
    pfam09258
    Location:506 → 751
    Glyco_transf_64; Glycosyl transferase family 64 domain
Nucleotide Protein
Heading Accession and Version

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