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lman2la lectin, mannose-binding 2-like a [ Perca flavescens (yellow perch) ]

Gene ID: 114570518, updated on 19-Jun-2024

Summary

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Gene symbol
lman2la
Gene description
lectin, mannose-binding 2-like a
Locus tag
EPR50_G00169380
Gene type
protein coding
RefSeq status
MODEL
Organism
Perca flavescens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Percinae; Perca
Orthologs
zebrafish all
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Genomic context

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See lman2la in Genome Data Viewer
Location:
chromosome: 16
Exon count:
9
Annotation release Status Assembly Chr Location
100 current PFLA_1.0 (GCF_004354835.1) 16 NC_041346.1 (18806147..18814147)

Chromosome 16 - NC_041346.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114571161 Neighboring gene mitochondrial fission process 1 Neighboring gene WW domain binding protein 1 Neighboring gene ADP-ribosylation factor-like protein 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041346.1 Chromosome 16 Reference PFLA_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-mannose binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
VIP36-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Perca flavescens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PFLA_1.0 Primary Assembly

Genomic

  1. NC_041346.1 Reference PFLA_1.0 Primary Assembly

    Range
    18806147..18814147
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028600819.1 → XP_028456620.1  VIP36-like protein isoform X1

    UniProtKB/TrEMBL
    A0A484CDG1
    Conserved Domains (1) summary
    cl14058
    Location:51 → 291
    lectin_L-type; legume lectins

  2. XM_028600820.1 → XP_028456621.1  VIP36-like protein isoform X2

    Conserved Domains (1) summary
    cl14058
    Location:51 → 280
    lectin_L-type; legume lectins
Nucleotide Protein
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