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colgalt1a collagen beta(1-O)galactosyltransferase 1a [ Perca flavescens (yellow perch) ]

Gene ID: 114568904, updated on 15-Mar-2024

Summary

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Gene symbol
colgalt1a
Gene description
collagen beta(1-O)galactosyltransferase 1a
Locus tag
EPR50_G00158850
Gene type
protein coding
RefSeq status
MODEL
Organism
Perca flavescens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Percinae; Perca
Orthologs
zebrafish all
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Genomic context

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See colgalt1a in Genome Data Viewer
Location:
chromosome: 15
Exon count:
14
Annotation release Status Assembly Chr Location
100 current PFLA_1.0 (GCF_004354835.1) 15 NC_041345.1 (14814128..14820798)

Chromosome 15 - NC_041345.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 350-like Neighboring gene zinc finger protein 846-like Neighboring gene zinc finger protein with KRAB and SCAN domains 1-like Neighboring gene 6-phosphogluconolactonase Neighboring gene GEM interacting protein Neighboring gene LIM homeobox transcription factor 1, alpha-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041345.1 Chromosome 15 Reference PFLA_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables procollagen galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
procollagen galactosyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Perca flavescens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PFLA_1.0 Primary Assembly

Genomic

  1. NC_041345.1 Reference PFLA_1.0 Primary Assembly

    Range
    14814128..14820798
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028598558.1 → XP_028454359.1  procollagen galactosyltransferase 1-like isoform X1

    UniProtKB/TrEMBL
    A0A484CHH1
    Conserved Domains (2) summary
    cl01298
    Location:327 → 512
    Glyco_transf_25; Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of ...
    cl11394
    Location:48 → 162
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. XM_028598561.1 → XP_028454362.1  procollagen galactosyltransferase 1-like isoform X3

    Conserved Domains (1) summary
    cd06532
    Location:235 → 418
    Glyco_transf_25; Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of ...

  3. XM_028598560.1 → XP_028454361.1  procollagen galactosyltransferase 1-like isoform X2

    Conserved Domains (2) summary
    cd06532
    Location:262 → 445
    Glyco_transf_25; Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of ...
    cl11394
    Location:7 → 95
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
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