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LOC114567883 procollagen galactosyltransferase 1-like [ Perca flavescens (yellow perch) ]

Gene ID: 114567883, updated on 21-Dec-2023

Summary

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Gene symbol
LOC114567883
Gene description
procollagen galactosyltransferase 1-like
Locus tag
EPR50_G00014630
Gene type
protein coding
RefSeq status
MODEL
Organism
Perca flavescens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Percinae; Perca
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Genomic context

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See LOC114567883 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
12
Annotation release Status Assembly Chr Location
100 current PFLA_1.0 (GCF_004354835.1) 2 NC_041332.1 (16148234..16161936, complement)

Chromosome 2 - NC_041332.1Genomic Context describing neighboring genes Neighboring gene nucleoredoxin-like protein 1 Neighboring gene nucleoredoxin-like protein 1 Neighboring gene tripartite motif-containing protein 35-like Neighboring gene long-chain fatty acid transport protein 1-like Neighboring gene CD97 antigen-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041332.1 Chromosome 2 Reference PFLA_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables procollagen galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
procollagen galactosyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Perca flavescens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PFLA_1.0 Primary Assembly

Genomic

  1. NC_041332.1 Reference PFLA_1.0 Primary Assembly

    Range
    16148234..16161936 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028597090.1 → XP_028452891.1  procollagen galactosyltransferase 1-like

    UniProtKB/TrEMBL
    A0A484DLW8
    Conserved Domains (2) summary
    cl01298
    Location:326 → 511
    Glyco_transf_25; Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of ...
    cl11394
    Location:47 → 162
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
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