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c1galt1a core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1a [ Perca flavescens (yellow perch) ]

Gene ID: 114567801, updated on 12-Sep-2024

Summary

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Gene symbol
c1galt1a
Gene description
core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1a
Gene type
protein coding
RefSeq status
MODEL
Organism
Perca flavescens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Percinae; Perca
Also known as
c1galt1; si:dkey-202e17.1
Orthologs
human zebrafish all
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Genomic context

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See c1galt1a in Genome Data Viewer
Location:
chromosome: 14
Exon count:
2
Annotation release Status Assembly Chr Location
100 current PFLA_1.0 (GCF_004354835.1) 14 NC_041344.1 (33303683..33310298)

Chromosome 14 - NC_041344.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114567562 Neighboring gene G2/M phase-specific E3 ubiquitin-protein ligase-like Neighboring gene collagen, type XXVIII, alpha 1a Neighboring gene replication protein A3 Neighboring gene UBAP1-MVB12-associated (UMA) domain containing 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041344.1 Chromosome 14 Reference PFLA_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing, core 1 IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
Names
core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Perca flavescens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PFLA_1.0 Primary Assembly

Genomic

  1. NC_041344.1 Reference PFLA_1.0 Primary Assembly

    Range
    33303683..33310298
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028596905.1 → XP_028452706.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1

    Conserved Domains (1) summary
    cl21608
    Location:70 → 154
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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