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pleca plectin a [ Perca flavescens (yellow perch) ]

Gene ID: 114567605, updated on 15-Mar-2024

Summary

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Gene symbol
pleca
Gene description
plectin a
Locus tag
EPR50_G00146160
Gene type
protein coding
RefSeq status
MODEL
Organism
Perca flavescens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Percinae; Perca
Orthologs
zebrafish all
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Genomic context

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See pleca in Genome Data Viewer
Location:
chromosome: 14
Exon count:
42
Annotation release Status Assembly Chr Location
100 current PFLA_1.0 (GCF_004354835.1) 14 NC_041344.1 (10358944..10458993)

Chromosome 14 - NC_041344.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 74-like Neighboring gene eukaryotic translation initiation factor 3, subunit E, b Neighboring gene doublesex- and mab-3-related transcription factor B1-like Neighboring gene epiplakin 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041344.1 Chromosome 14 Reference PFLA_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ankyrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hemidesmosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in hemidesmosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plectin-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Perca flavescens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PFLA_1.0 Primary Assembly

Genomic

  1. NC_041344.1 Reference PFLA_1.0 Primary Assembly

    Range
    10358944..10458993
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028596668.1 → XP_028452469.1  plectin-like isoform X1

    UniProtKB/TrEMBL
    A0A484CP23
    Conserved Domains (9) summary
    PTZ00121
    Location:1556 → 2386
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:566 → 660
    SPEC; Spectrin repeats
    smart00250
    Location:3140 → 3176
    PLEC; Plectin repeat
    COG5069
    Location:70 → 297
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:661 → 851
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:3103 → 3142
    Plectin; Plectin repeat
    cl27652
    Location:2739 → 2777
    Plectin; Plectin repeat
    pfam17380
    Location:2346 → 2675
    DUF5401; Family of unknown function (DUF5401)
    cl17036
    Location:853 → 898
    SH3; Src Homology 3 domain superfamily

  2. XM_028596669.1 → XP_028452470.1  plectin-like isoform X2

    UniProtKB/TrEMBL
    A0A484CP23
    Conserved Domains (9) summary
    PTZ00121
    Location:1553 → 2383
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:563 → 657
    SPEC; Spectrin repeats
    smart00250
    Location:3137 → 3173
    PLEC; Plectin repeat
    COG5069
    Location:72 → 294
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:658 → 848
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:3100 → 3139
    Plectin; Plectin repeat
    cl27652
    Location:2736 → 2774
    Plectin; Plectin repeat
    pfam17380
    Location:2343 → 2672
    DUF5401; Family of unknown function (DUF5401)
    cl17036
    Location:850 → 895
    SH3; Src Homology 3 domain superfamily

  3. XM_028596670.1 → XP_028452471.1  plectin-like isoform X3

    UniProtKB/TrEMBL
    A0A484CP23
    Conserved Domains (9) summary
    PTZ00121
    Location:1546 → 2376
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:563 → 657
    SPEC; Spectrin repeats
    smart00250
    Location:3130 → 3166
    PLEC; Plectin repeat
    COG5069
    Location:72 → 294
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:658 → 848
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:3093 → 3132
    Plectin; Plectin repeat
    cl27652
    Location:2729 → 2767
    Plectin; Plectin repeat
    pfam17380
    Location:2336 → 2665
    DUF5401; Family of unknown function (DUF5401)
    cl17036
    Location:850 → 895
    SH3; Src Homology 3 domain superfamily

  4. XM_028596675.1 → XP_028452476.1  plectin-like isoform X8

    UniProtKB/TrEMBL
    A0A484CP23
    Conserved Domains (9) summary
    PTZ00121
    Location:1511 → 2341
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:521 → 615
    SPEC; Spectrin repeats
    smart00250
    Location:3095 → 3131
    PLEC; Plectin repeat
    COG5069
    Location:35 → 252
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:616 → 806
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:3058 → 3097
    Plectin; Plectin repeat
    cl27652
    Location:2694 → 2732
    Plectin; Plectin repeat
    pfam17380
    Location:2301 → 2630
    DUF5401; Family of unknown function (DUF5401)
    cl17036
    Location:808 → 853
    SH3; Src Homology 3 domain superfamily

  5. XM_028596677.1 → XP_028452478.1  plectin-like isoform X10

    UniProtKB/TrEMBL
    A0A484CP23
    Conserved Domains (9) summary
    PTZ00121
    Location:1494 → 2324
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:504 → 598
    SPEC; Spectrin repeats
    smart00250
    Location:3078 → 3114
    PLEC; Plectin repeat
    COG5069
    Location:18 → 235
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:599 → 789
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:3041 → 3080
    Plectin; Plectin repeat
    cl27652
    Location:2677 → 2715
    Plectin; Plectin repeat
    pfam17380
    Location:2284 → 2613
    DUF5401; Family of unknown function (DUF5401)
    cl17036
    Location:791 → 836
    SH3; Src Homology 3 domain superfamily

  6. XM_028596674.1 → XP_028452475.1  plectin-like isoform X7

    UniProtKB/TrEMBL
    A0A484CP23
    Conserved Domains (9) summary
    PTZ00121
    Location:1515 → 2345
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:525 → 619
    SPEC; Spectrin repeats
    smart00250
    Location:3099 → 3135
    PLEC; Plectin repeat
    COG5069
    Location:39 → 256
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:620 → 810
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:3062 → 3101
    Plectin; Plectin repeat
    cl27652
    Location:2698 → 2736
    Plectin; Plectin repeat
    pfam17380
    Location:2305 → 2634
    DUF5401; Family of unknown function (DUF5401)
    cl17036
    Location:812 → 857
    SH3; Src Homology 3 domain superfamily

  7. XM_028596671.1 → XP_028452472.1  plectin-like isoform X4

    UniProtKB/TrEMBL
    A0A484CP23
    Conserved Domains (9) summary
    PTZ00121
    Location:1531 → 2361
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:541 → 635
    SPEC; Spectrin repeats
    smart00250
    Location:3115 → 3151
    PLEC; Plectin repeat
    COG5069
    Location:50 → 272
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:636 → 826
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:3078 → 3117
    Plectin; Plectin repeat
    cl27652
    Location:2714 → 2752
    Plectin; Plectin repeat
    pfam17380
    Location:2321 → 2650
    DUF5401; Family of unknown function (DUF5401)
    cl17036
    Location:828 → 873
    SH3; Src Homology 3 domain superfamily

  8. XM_028596672.1 → XP_028452473.1  plectin-like isoform X5

    UniProtKB/TrEMBL
    A0A484CP23
    Conserved Domains (9) summary
    PTZ00121
    Location:1524 → 2354
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:541 → 635
    SPEC; Spectrin repeats
    smart00250
    Location:3108 → 3144
    PLEC; Plectin repeat
    COG5069
    Location:50 → 272
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:636 → 826
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:3071 → 3110
    Plectin; Plectin repeat
    cl27652
    Location:2707 → 2745
    Plectin; Plectin repeat
    pfam17380
    Location:2314 → 2643
    DUF5401; Family of unknown function (DUF5401)
    cl17036
    Location:828 → 873
    SH3; Src Homology 3 domain superfamily

  9. XM_028596673.1 → XP_028452474.1  plectin-like isoform X6

    UniProtKB/TrEMBL
    A0A484CP23
    Conserved Domains (9) summary
    PTZ00121
    Location:1517 → 2347
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:527 → 621
    SPEC; Spectrin repeats
    smart00250
    Location:3101 → 3137
    PLEC; Plectin repeat
    COG5069
    Location:41 → 258
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:622 → 812
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:3064 → 3103
    Plectin; Plectin repeat
    cl27652
    Location:2700 → 2738
    Plectin; Plectin repeat
    pfam17380
    Location:2307 → 2636
    DUF5401; Family of unknown function (DUF5401)
    cl17036
    Location:814 → 859
    SH3; Src Homology 3 domain superfamily

  10. XM_028596676.1 → XP_028452477.1  plectin-like isoform X9

    UniProtKB/TrEMBL
    A0A484CP23
    Conserved Domains (9) summary
    PTZ00121
    Location:1510 → 2340
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:527 → 621
    SPEC; Spectrin repeats
    smart00250
    Location:3094 → 3130
    PLEC; Plectin repeat
    COG5069
    Location:41 → 258
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:622 → 812
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:3057 → 3096
    Plectin; Plectin repeat
    cl27652
    Location:2693 → 2731
    Plectin; Plectin repeat
    pfam17380
    Location:2300 → 2629
    DUF5401; Family of unknown function (DUF5401)
    cl17036
    Location:814 → 859
    SH3; Src Homology 3 domain superfamily
Nucleotide Protein
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