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sgcd sarcoglycan, delta (dystrophin-associated glycoprotein) [ Perca flavescens (yellow perch) ]

Gene ID: 114566882, updated on 15-Mar-2024

Summary

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Gene symbol
sgcd
Gene description
sarcoglycan, delta (dystrophin-associated glycoprotein)
Locus tag
EPR50_G00141770
Gene type
protein coding
RefSeq status
MODEL
Organism
Perca flavescens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Percinae; Perca
Orthologs
human zebrafish all
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Genomic context

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See sgcd in Genome Data Viewer
Location:
chromosome: 13
Exon count:
12
Annotation release Status Assembly Chr Location
100 current PFLA_1.0 (GCF_004354835.1) 13 NC_041343.1 (29777077..30100148, complement)

Chromosome 13 - NC_041343.1Genomic Context describing neighboring genes Neighboring gene rho GTPase-activating protein 7-like Neighboring gene transfer RNA aspartic acid (anticodon GUC) Neighboring gene uncharacterized LOC114567302 Neighboring gene aromatic-L-amino-acid decarboxylase-like Neighboring gene uncharacterized LOC114567283

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041343.1 Chromosome 13 Reference PFLA_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan
Names
sarcoglycan delta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Perca flavescens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PFLA_1.0 Primary Assembly

Genomic

  1. NC_041343.1 Reference PFLA_1.0 Primary Assembly

    Range
    29777077..30100148 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028595713.1 → XP_028451514.1  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A484CNL1
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 279
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_028595709.1 → XP_028451510.1  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A484CNL1
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 279
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_028595711.1 → XP_028451512.1  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A484CNL1
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 279
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  4. XM_028595712.1 → XP_028451513.1  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A484CNL1
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 279
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  5. XM_028595708.1 → XP_028451509.1  delta-sarcoglycan isoform X1

    Conserved Domains (1) summary
    pfam04790
    Location:23 → 280
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

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