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kptn kaptin (actin binding protein) [ Perca flavescens (yellow perch) ]

Gene ID: 114566650, updated on 15-Mar-2024

Summary

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Gene symbol
kptn
Gene description
kaptin (actin binding protein)
Locus tag
EPR50_G00134100
Gene type
protein coding
RefSeq status
MODEL
Organism
Perca flavescens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Percinae; Perca
Orthologs
human zebrafish all
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Genomic context

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See kptn in Genome Data Viewer
Location:
chromosome: 13
Exon count:
12
Annotation release Status Assembly Chr Location
100 current PFLA_1.0 (GCF_004354835.1) 13 NC_041343.1 (5233821..5249353)

Chromosome 13 - NC_041343.1Genomic Context describing neighboring genes Neighboring gene H3 histone, family 3C Neighboring gene cone-rod homeobox Neighboring gene uncharacterized LOC114567205 Neighboring gene calpain, small subunit 1 a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041343.1 Chromosome 13 Reference PFLA_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to amino acid starvation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of TORC1 signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of KICSTOR complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lamellipodium IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
KICSTOR complex protein kaptin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Perca flavescens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PFLA_1.0 Primary Assembly

Genomic

  1. NC_041343.1 Reference PFLA_1.0 Primary Assembly

    Range
    5233821..5249353
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028595290.1 → XP_028451091.1  KICSTOR complex protein kaptin isoform X1

    UniProtKB/TrEMBL
    A0A484CLF6

  2. XM_028595291.1 → XP_028451092.1  KICSTOR complex protein kaptin isoform X2

Nucleotide Protein
Heading Accession and Version

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