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hs6st2 heparan sulfate 6-O-sulfotransferase 2 [ Perca flavescens (yellow perch) ]

Gene ID: 114562518, updated on 15-Mar-2024

Summary

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Gene symbol
hs6st2
Gene description
heparan sulfate 6-O-sulfotransferase 2
Locus tag
EPR50_G00106970
Gene type
protein coding
RefSeq status
MODEL
Organism
Perca flavescens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Percinae; Perca
Orthologs
zebrafish all
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Genomic context

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See hs6st2 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
3
Annotation release Status Assembly Chr Location
100 current PFLA_1.0 (GCF_004354835.1) 10 NC_041340.1 (16288857..16291809, complement)

Chromosome 10 - NC_041340.1Genomic Context describing neighboring genes Neighboring gene RAP2C, member of RAS oncogene family Neighboring gene muscleblind-like splicing regulator 3 Neighboring gene transfer RNA phenylalanine (anticodon GAA) Neighboring gene Transmembrane protein 179-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041340.1 Chromosome 10 Reference PFLA_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparan sulfate 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, enzymatic modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan-sulfate 6-O-sulfotransferase 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Perca flavescens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PFLA_1.0 Primary Assembly

Genomic

  1. NC_041340.1 Reference PFLA_1.0 Primary Assembly

    Range
    16288857..16291809 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028588932.1 → XP_028444733.1  heparan-sulfate 6-O-sulfotransferase 2-like isoform X3

    Conserved Domains (1) summary
    pfam03567
    Location:64 → 329
    Sulfotransfer_2; Sulfotransferase family

  2. XM_028588931.1 → XP_028444732.1  heparan-sulfate 6-O-sulfotransferase 2-like isoform X2

    Conserved Domains (1) summary
    pfam03567
    Location:103 → 367
    Sulfotransfer_2; Sulfotransferase family

  3. XM_028588930.1 → XP_028444731.1  heparan-sulfate 6-O-sulfotransferase 2-like isoform X1

    UniProtKB/TrEMBL
    A0A484CXQ8
    Conserved Domains (1) summary
    pfam03567
    Location:103 → 368
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

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