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chst14 carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14 [ Perca flavescens (yellow perch) ]

Gene ID: 114562009, updated on 15-Mar-2024

Summary

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Gene symbol
chst14
Gene description
carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14
Locus tag
EPR50_G00094690
Gene type
protein coding
RefSeq status
MODEL
Organism
Perca flavescens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Percinae; Perca
Orthologs
human zebrafish all
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Genomic context

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See chst14 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
2
Annotation release Status Assembly Chr Location
100 current PFLA_1.0 (GCF_004354835.1) 9 NC_041339.1 (3409274..3411363, complement)

Chromosome 9 - NC_041339.1Genomic Context describing neighboring genes Neighboring gene exocyst complex component 1 Neighboring gene centrosomal protein 135 Neighboring gene capping protein inhibiting regulator of actin dynamics Neighboring gene aminoadipate-semialdehyde dehydrogenase Neighboring gene uncharacterized LOC114562114

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041339.1 Chromosome 9 Reference PFLA_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in dermatan sulfate proteoglycan metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: carbohydrate sulfotransferase 14
Names
carbohydrate sulfotransferase 14

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Perca flavescens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PFLA_1.0 Primary Assembly

Genomic

  1. NC_041339.1 Reference PFLA_1.0 Primary Assembly

    Range
    3409274..3411363 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028588220.1 → XP_028444021.1  LOW QUALITY PROTEIN: carbohydrate sulfotransferase 14

    UniProtKB/TrEMBL
    A0A484D095
    Conserved Domains (1) summary
    pfam03567
    Location:139 → 361
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

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