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tbl1xr1a TBL1X/Y related 1a [ Perca flavescens (yellow perch) ]

Gene ID: 114561209, updated on 15-Mar-2024

Summary

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Gene symbol
tbl1xr1a
Gene description
TBL1X/Y related 1a
Locus tag
EPR50_G00095830
Gene type
protein coding
RefSeq status
MODEL
Organism
Perca flavescens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Percinae; Perca
Also known as
tbl1xr1
Orthologs
human zebrafish all
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Genomic context

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See tbl1xr1a in Genome Data Viewer
Location:
chromosome: 9
Exon count:
16
Annotation release Status Assembly Chr Location
100 current PFLA_1.0 (GCF_004354835.1) 9 NC_041339.1 (7449750..7516620)

Chromosome 9 - NC_041339.1Genomic Context describing neighboring genes Neighboring gene S100 calcium binding protein P Neighboring gene uncharacterized LOC114561029 Neighboring gene uncharacterized LOC114561894 Neighboring gene uncharacterized protein KIAA1211 homolog Neighboring gene uncharacterized LOC114561895

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041339.1 Chromosome 9 Reference PFLA_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone deacetylase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
F-box-like/WD repeat-containing protein TBL1XR1
Names
TBL1X receptor 1
tbl1x receptor 1a
transducin beta like 1 X-linked receptor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Perca flavescens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PFLA_1.0 Primary Assembly

Genomic

  1. NC_041339.1 Reference PFLA_1.0 Primary Assembly

    Range
    7449750..7516620
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028587039.1 → XP_028442840.1  F-box-like/WD repeat-containing protein TBL1XR1

    UniProtKB/TrEMBL
    A0A484CZ31
    Conserved Domains (3) summary
    cd00200
    Location:165 → 471
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:270 → 307
    7WD40; WD40 repeat [structural motif]
    pfam08513
    Location:7 → 31
    LisH
Nucleotide Protein
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