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tmtc2b transmembrane O-mannosyltransferase targeting cadherins 2b [ Perca flavescens (yellow perch) ]

Gene ID: 114560714, updated on 15-Mar-2024

Summary

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Gene symbol
tmtc2b
Gene description
transmembrane O-mannosyltransferase targeting cadherins 2b
Locus tag
EPR50_G00084940
Gene type
protein coding
RefSeq status
MODEL
Organism
Perca flavescens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Percinae; Perca
Orthologs
zebrafish all
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Genomic context

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See tmtc2b in Genome Data Viewer
Location:
chromosome: 8
Exon count:
13
Annotation release Status Assembly Chr Location
100 current PFLA_1.0 (GCF_004354835.1) 8 NC_041338.1 (11818911..11943474, complement)

Chromosome 8 - NC_041338.1Genomic Context describing neighboring genes Neighboring gene zinc finger CCCH-type containing 18 Neighboring gene uncharacterized LOC114560850 Neighboring gene calcium release activated channel regulator 2Aa Neighboring gene protein arginine N-methyltransferase 8-B

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041338.1 Chromosome 8 Reference PFLA_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Perca flavescens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PFLA_1.0 Primary Assembly

Genomic

  1. NC_041338.1 Reference PFLA_1.0 Primary Assembly

    Range
    11818911..11943474 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028586273.1 → XP_028442074.1  protein O-mannosyl-transferase TMTC2-like isoform X1

    UniProtKB/TrEMBL
    A0A484D3D6
    Conserved Domains (4) summary
    COG0457
    Location:489 → 720
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    COG5010
    Location:651 → 831
    TadD; Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures]
    sd00006
    Location:501 → 529
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:249 → 323
    DUF1736; Domain of unknown function (DUF1736)

  2. XM_028586274.1 → XP_028442075.1  protein O-mannosyl-transferase TMTC2-like isoform X2

    Conserved Domains (3) summary
    COG0457
    Location:489 → 720
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:501 → 529
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:249 → 323
    DUF1736; Domain of unknown function (DUF1736)
Nucleotide Protein
Heading Accession and Version

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