U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

si:ch73-62b13.1 Carbohydrate sulfotransferase 1-like [ Perca flavescens (yellow perch) ]

Gene ID: 114560566, updated on 15-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
si:ch73-62b13.1
Gene description
Carbohydrate sulfotransferase 1-like
Locus tag
EPR50_G00085280
Gene type
protein coding
RefSeq status
MODEL
Organism
Perca flavescens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Percinae; Perca
Orthologs
zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See si:ch73-62b13.1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
4
Annotation release Status Assembly Chr Location
100 current PFLA_1.0 (GCF_004354835.1) 8 NC_041338.1 (13320273..13330491)

Chromosome 8 - NC_041338.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114559682 Neighboring gene mitochondrial transcription termination factor 2 Neighboring gene electron transfer flavoprotein subunit beta lysine methyltransferase Neighboring gene uncharacterized LOC114560577

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_041338.1 Chromosome 8 Reference PFLA_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables keratan sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in keratan sulfate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
carbohydrate sulfotransferase 1-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Perca flavescens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PFLA_1.0 Primary Assembly

Genomic

  1. NC_041338.1 Reference PFLA_1.0 Primary Assembly

    Range
    13320273..13330491
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028586025.1 → XP_028441826.1  carbohydrate sulfotransferase 1-like isoform X2

    UniProtKB/TrEMBL
    A0A484D223
    Conserved Domains (1) summary
    cl21551
    Location:205 → 394
    Sulfotransfer_3; Sulfotransferase family

  2. XM_028586022.1 → XP_028441823.1  carbohydrate sulfotransferase 1-like isoform X1

    Conserved Domains (1) summary
    cl21551
    Location:217 → 406
    Sulfotransfer_3; Sulfotransferase family

  3. XM_028586023.1 → XP_028441824.1  carbohydrate sulfotransferase 1-like isoform X2

    UniProtKB/TrEMBL
    A0A484D223
    Conserved Domains (1) summary
    cl21551
    Location:205 → 394
    Sulfotransfer_3; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases