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tmtc3 transmembrane O-mannosyltransferase targeting cadherins 3 [ Perca flavescens (yellow perch) ]

Gene ID: 114559904, updated on 15-Mar-2024

Summary

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Gene symbol
tmtc3
Gene description
transmembrane O-mannosyltransferase targeting cadherins 3
Locus tag
EPR50_G00091540
Gene type
protein coding
RefSeq status
MODEL
Organism
Perca flavescens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Percinae; Perca
Orthologs
human zebrafish all
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Genomic context

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See tmtc3 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
14
Annotation release Status Assembly Chr Location
100 current PFLA_1.0 (GCF_004354835.1) 8 NC_041338.1 (31776349..31813024)

Chromosome 8 - NC_041338.1Genomic Context describing neighboring genes Neighboring gene lymphatic vessel endothelial hyaluronic receptor 1b Neighboring gene RNA 5'-phosphate and 3'-OH ligase 1 Neighboring gene centrosomal protein 290 Neighboring gene kit ligand a Neighboring gene solute carrier family 23 member 2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041338.1 Chromosome 8 Reference PFLA_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC3
Names
transmembrane and tetratricopeptide repeat containing 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Perca flavescens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PFLA_1.0 Primary Assembly

Genomic

  1. NC_041338.1 Reference PFLA_1.0 Primary Assembly

    Range
    31776349..31813024
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028584927.1 → XP_028440728.1  protein O-mannosyl-transferase TMTC3 isoform X1

    UniProtKB/TrEMBL
    A0A484D5U0
    Conserved Domains (4) summary
    TIGR02917
    Location:438 → 802
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:530 → 557
    TPR; TPR repeat [structural motif]
    cl25704
    Location:98 → 446
    Stt3; Asparagine N-glycosylation enzyme, membrane subunit Stt3 [Posttranslational modification, protein turnover, chaperones]
    pfam08409
    Location:258 → 331
    DUF1736; Domain of unknown function (DUF1736)

  2. XM_028584926.1 → XP_028440727.1  protein O-mannosyl-transferase TMTC3 isoform X1

    UniProtKB/TrEMBL
    A0A484D5U0
    Conserved Domains (4) summary
    TIGR02917
    Location:438 → 802
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:530 → 557
    TPR; TPR repeat [structural motif]
    cl25704
    Location:98 → 446
    Stt3; Asparagine N-glycosylation enzyme, membrane subunit Stt3 [Posttranslational modification, protein turnover, chaperones]
    pfam08409
    Location:258 → 331
    DUF1736; Domain of unknown function (DUF1736)

  3. XM_028584928.1 → XP_028440729.1  protein O-mannosyl-transferase TMTC3 isoform X2

    Conserved Domains (3) summary
    TIGR02917
    Location:430 → 794
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:522 → 549
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:250 → 323
    DUF1736; Domain of unknown function (DUF1736)
Nucleotide Protein
Heading Accession and Version

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