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lrp5 low density lipoprotein receptor-related protein 5 [ Perca flavescens (yellow perch) ]

Gene ID: 114559899, updated on 15-Mar-2024

Summary

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Gene symbol
lrp5
Gene description
low density lipoprotein receptor-related protein 5
Locus tag
EPR50_G00083120
Gene type
protein coding
RefSeq status
MODEL
Organism
Perca flavescens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Percinae; Perca
Orthologs
human zebrafish all
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Genomic context

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See lrp5 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
29
Annotation release Status Assembly Chr Location
100 current PFLA_1.0 (GCF_004354835.1) 8 NC_041338.1 (2164854..2238637)

Chromosome 8 - NC_041338.1Genomic Context describing neighboring genes Neighboring gene cytochrome c oxidase subunit 8B, mitochondrial-like Neighboring gene chromosome 8 C11orf24 homolog Neighboring gene transfer RNA proline (anticodon UGG) Neighboring gene G1/S-specific cyclin-D1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041338.1 Chromosome 8 Reference PFLA_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: low-density lipoprotein receptor-related protein 5
Names
LDL receptor related protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Perca flavescens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PFLA_1.0 Primary Assembly

Genomic

  1. NC_041338.1 Reference PFLA_1.0 Primary Assembly

    Range
    2164854..2238637
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028584913.1 → XP_028440714.1  LOW QUALITY PROTEIN: low-density lipoprotein receptor-related protein 5

    UniProtKB/TrEMBL
    A0A484D1B9
    Conserved Domains (6) summary
    smart00135
    Location:414 → 455
    LY; Low-density lipoprotein-receptor YWTD domain
    cd00112
    Location:1346 → 1380
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
    cd05819
    Location:423 → 460
    NHL; NHL repeat [structural motif]
    pfam00058
    Location:168 → 208
    Ldl_recept_b; Low-density lipoprotein receptor repeat class B
    cl18310
    Location:413 → 747
    NHL; NHL repeat unit of beta-propeller proteins
    pfam14670
    Location:918 → 953
    FXa_inhibition; Coagulation Factor Xa inhibitory site
Nucleotide Protein
Heading Accession and Version

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