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b4galnt1a beta-1,4-N-acetyl-galactosaminyl transferase 1a [ Perca flavescens (yellow perch) ]

Gene ID: 114559465, updated on 15-Mar-2024

Summary

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Gene symbol
b4galnt1a
Gene description
beta-1,4-N-acetyl-galactosaminyl transferase 1a
Locus tag
EPR50_G00076720
Gene type
protein coding
RefSeq status
MODEL
Organism
Perca flavescens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Percinae; Perca
Orthologs
zebrafish all
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Genomic context

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See b4galnt1a in Genome Data Viewer
Location:
chromosome: 7
Exon count:
11
Annotation release Status Assembly Chr Location
100 current PFLA_1.0 (GCF_004354835.1) 7 NC_041337.1 (19534926..19553957, complement)

Chromosome 7 - NC_041337.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 26 member 10 Neighboring gene uncharacterized LOC114559124 Neighboring gene core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1, like a Neighboring gene tachykinin precursor 3a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041337.1 Chromosome 7 Reference PFLA_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ganglioside biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4 N-acetylgalactosaminyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Perca flavescens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PFLA_1.0 Primary Assembly

Genomic

  1. NC_041337.1 Reference PFLA_1.0 Primary Assembly

    Range
    19534926..19553957 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028584133.1 → XP_028439934.1  beta-1,4 N-acetylgalactosaminyltransferase 1-like isoform X2

    UniProtKB/TrEMBL
    A0A484D594
    Conserved Domains (1) summary
    pfam00535
    Location:265 → 385
    Glycos_transf_2; Glycosyl transferase family 2

  2. XM_028584132.1 → XP_028439933.1  beta-1,4 N-acetylgalactosaminyltransferase 1-like isoform X1

    UniProtKB/TrEMBL
    A0A484D594
    Conserved Domains (1) summary
    pfam00535
    Location:280 → 400
    Glycos_transf_2; Glycosyl transferase family 2
Nucleotide Protein
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